Model info
| Transcription factor | Prdm9 | ||||||||
| Model | PRDM9_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hRnddGGYAGYAvCWbCWb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.919 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 490 | ||||||||
| TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
| TF subfamily | unclassified {2.3.4.0} | ||||||||
| MGI | MGI:2384854 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | PRDM9_MOUSE | ||||||||
| UniProt AC | Q96EQ9 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Prdm9 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 251.0 | 101.0 | 56.0 | 82.0 |
| 02 | 303.0 | 48.0 | 98.0 | 41.0 |
| 03 | 137.0 | 72.0 | 171.0 | 110.0 |
| 04 | 254.0 | 33.0 | 121.0 | 82.0 |
| 05 | 136.0 | 31.0 | 137.0 | 186.0 |
| 06 | 52.0 | 3.0 | 401.0 | 34.0 |
| 07 | 104.0 | 7.0 | 368.0 | 11.0 |
| 08 | 15.0 | 270.0 | 2.0 | 203.0 |
| 09 | 424.0 | 0.0 | 60.0 | 6.0 |
| 10 | 39.0 | 1.0 | 446.0 | 4.0 |
| 11 | 11.0 | 243.0 | 8.0 | 228.0 |
| 12 | 446.0 | 6.0 | 33.0 | 5.0 |
| 13 | 91.0 | 117.0 | 240.0 | 42.0 |
| 14 | 3.0 | 486.0 | 0.0 | 1.0 |
| 15 | 300.0 | 29.0 | 2.0 | 159.0 |
| 16 | 28.0 | 160.0 | 122.0 | 180.0 |
| 17 | 20.0 | 430.0 | 15.0 | 25.0 |
| 18 | 129.0 | 59.0 | 22.0 | 280.0 |
| 19 | 46.0 | 122.0 | 190.0 | 132.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.711 | -0.19 | -0.768 | -0.395 |
| 02 | 0.898 | -0.918 | -0.22 | -1.07 |
| 03 | 0.111 | -0.523 | 0.33 | -0.106 |
| 04 | 0.723 | -1.278 | -0.012 | -0.395 |
| 05 | 0.103 | -1.338 | 0.111 | 0.413 |
| 06 | -0.84 | -3.306 | 1.177 | -1.25 |
| 07 | -0.162 | -2.675 | 1.092 | -2.291 |
| 08 | -2.014 | 0.783 | -3.554 | 0.5 |
| 09 | 1.233 | -4.383 | -0.701 | -2.799 |
| 10 | -1.118 | -3.885 | 1.283 | -3.107 |
| 11 | -2.291 | 0.679 | -2.564 | 0.615 |
| 12 | 1.283 | -2.799 | -1.278 | -2.941 |
| 13 | -0.293 | -0.045 | 0.666 | -1.047 |
| 14 | -3.306 | 1.369 | -4.383 | -3.885 |
| 15 | 0.888 | -1.401 | -3.554 | 0.258 |
| 16 | -1.435 | 0.264 | -0.004 | 0.381 |
| 17 | -1.75 | 1.247 | -2.014 | -1.542 |
| 18 | 0.051 | -0.717 | -1.662 | 0.82 |
| 19 | -0.959 | -0.004 | 0.434 | 0.074 |