Transcription factor | PGR (GeneCards) | ||||||||
Model | PRGR_HUMAN.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 16 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | RGvACWYYbTGTdCYb | ||||||||
Best auROC (human) | 0.97 | ||||||||
Best auROC (mouse) | 0.957 | ||||||||
Peak sets in benchmark (human) | 51 | ||||||||
Peak sets in benchmark (mouse) | 15 | ||||||||
Aligned words | 315 | ||||||||
TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
TF subfamily | GR-like receptors (NR3C) {2.1.1.1} | ||||||||
HGNC | HGNC:8910 | ||||||||
EntrezGene | GeneID:5241 (SSTAR profile) | ||||||||
UniProt ID | PRGR_HUMAN | ||||||||
UniProt AC | P06401 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | PGR expression | ||||||||
ReMap ChIP-seq dataset list | PGR datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 133.0 | 7.0 | 127.0 | 48.0 |
02 | 31.0 | 3.0 | 266.0 | 15.0 |
03 | 157.0 | 50.0 | 59.0 | 49.0 |
04 | 282.0 | 16.0 | 8.0 | 9.0 |
05 | 3.0 | 276.0 | 3.0 | 33.0 |
06 | 203.0 | 11.0 | 36.0 | 65.0 |
07 | 9.0 | 57.0 | 54.0 | 195.0 |
08 | 25.0 | 69.0 | 36.0 | 185.0 |
09 | 21.0 | 147.0 | 46.0 | 101.0 |
10 | 29.0 | 20.0 | 13.0 | 253.0 |
11 | 5.0 | 27.0 | 271.0 | 12.0 |
12 | 18.0 | 11.0 | 11.0 | 275.0 |
13 | 74.0 | 41.0 | 47.0 | 153.0 |
14 | 20.0 | 255.0 | 3.0 | 37.0 |
15 | 26.0 | 83.0 | 8.0 | 198.0 |
16 | 41.0 | 77.0 | 74.0 | 123.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.517 | -2.252 | 0.471 | -0.484 |
02 | -0.905 | -2.894 | 1.205 | -1.585 |
03 | 0.681 | -0.444 | -0.283 | -0.464 |
04 | 1.263 | -1.526 | -2.14 | -2.039 |
05 | -2.894 | 1.241 | -2.894 | -0.845 |
06 | 0.936 | -1.864 | -0.762 | -0.188 |
07 | -2.039 | -0.316 | -0.369 | 0.896 |
08 | -1.11 | -0.13 | -0.762 | 0.844 |
09 | -1.274 | 0.616 | -0.525 | 0.245 |
10 | -0.969 | -1.319 | -1.715 | 1.155 |
11 | -2.522 | -1.037 | 1.223 | -1.786 |
12 | -1.417 | -1.864 | -1.864 | 1.238 |
13 | -0.061 | -0.636 | -0.504 | 0.655 |
14 | -1.319 | 1.163 | -2.894 | -0.735 |
15 | -1.072 | 0.052 | -2.14 | 0.911 |
16 | -0.636 | -0.022 | -0.061 | 0.439 |