We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPGR
(GeneCards)
ModelPRGR_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusRGvACWYYbTGTdCYb
Best auROC (human)0.97
Best auROC (mouse)0.957
Peak sets in benchmark (human)51
Peak sets in benchmark (mouse)15
Aligned words315
TF familySteroid hormone receptors (NR3) {2.1.1}
TF subfamilyGR-like receptors (NR3C) {2.1.1.1}
HGNCHGNC:8910
EntrezGeneGeneID:5241
(SSTAR profile)
UniProt IDPRGR_HUMAN
UniProt ACP06401
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.96321
0.0005 5.846509999999999
0.0001 7.70396
GTEx tissue expression atlas PGR expression
ReMap ChIP-seq dataset list PGR datasets
Motifs in JASPAR
PCM
ACGT
01133.07.0127.048.0
0231.03.0266.015.0
03157.050.059.049.0
04282.016.08.09.0
053.0276.03.033.0
06203.011.036.065.0
079.057.054.0195.0
0825.069.036.0185.0
0921.0147.046.0101.0
1029.020.013.0253.0
115.027.0271.012.0
1218.011.011.0275.0
1374.041.047.0153.0
1420.0255.03.037.0
1526.083.08.0198.0
1641.077.074.0123.0
PWM
ACGT
010.517-2.2520.471-0.484
02-0.905-2.8941.205-1.585
030.681-0.444-0.283-0.464
041.263-1.526-2.14-2.039
05-2.8941.241-2.894-0.845
060.936-1.864-0.762-0.188
07-2.039-0.316-0.3690.896
08-1.11-0.13-0.7620.844
09-1.2740.616-0.5250.245
10-0.969-1.319-1.7151.155
11-2.522-1.0371.223-1.786
12-1.417-1.864-1.8641.238
13-0.061-0.636-0.5040.655
14-1.3191.163-2.894-0.735
15-1.0720.052-2.140.911
16-0.636-0.022-0.0610.439