We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPGR
(GeneCards)
ModelPRGR_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensusRGvACARvv
Best auROC (human)0.873
Best auROC (mouse)0.854
Peak sets in benchmark (human)51
Peak sets in benchmark (mouse)15
Aligned words500
TF familySteroid hormone receptors (NR3) {2.1.1}
TF subfamilyGR-like receptors (NR3C) {2.1.1.1}
HGNCHGNC:8910
EntrezGeneGeneID:5241
(SSTAR profile)
UniProt IDPRGR_HUMAN
UniProt ACP06401
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.42202
0.0005 6.375655
0.0001 7.783685
GTEx tissue expression atlas PGR expression
ReMap ChIP-seq dataset list PGR datasets
Motifs in JASPAR
PCM
ACGT
01246.00.0227.027.0
0219.00.0481.00.0
03236.066.0148.050.0
04489.01.08.02.0
053.0492.01.04.0
06486.01.09.04.0
0792.030.0369.09.0
08254.083.0109.054.0
09242.0153.069.036.0
PWM
ACGT
010.671-4.40.591-1.489
02-1.818-4.41.338-4.4
030.63-0.6280.167-0.898
041.355-3.903-2.584-3.573
05-3.3251.361-3.903-3.126
061.349-3.903-2.484-3.126
07-0.302-1.3891.074-2.484
080.703-0.403-0.135-0.823
090.6550.2-0.584-1.215