Model info
| Transcription factor | PGR (GeneCards) | ||||||||
| Model | PRGR_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | RGvACARvv | ||||||||
| Best auROC (human) | 0.873 | ||||||||
| Best auROC (mouse) | 0.854 | ||||||||
| Peak sets in benchmark (human) | 51 | ||||||||
| Peak sets in benchmark (mouse) | 15 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
| TF subfamily | GR-like receptors (NR3C) {2.1.1.1} | ||||||||
| HGNC | HGNC:8910 | ||||||||
| EntrezGene | GeneID:5241 (SSTAR profile) | ||||||||
| UniProt ID | PRGR_HUMAN | ||||||||
| UniProt AC | P06401 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PGR expression | ||||||||
| ReMap ChIP-seq dataset list | PGR datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 246.0 | 0.0 | 227.0 | 27.0 |
| 02 | 19.0 | 0.0 | 481.0 | 0.0 |
| 03 | 236.0 | 66.0 | 148.0 | 50.0 |
| 04 | 489.0 | 1.0 | 8.0 | 2.0 |
| 05 | 3.0 | 492.0 | 1.0 | 4.0 |
| 06 | 486.0 | 1.0 | 9.0 | 4.0 |
| 07 | 92.0 | 30.0 | 369.0 | 9.0 |
| 08 | 254.0 | 83.0 | 109.0 | 54.0 |
| 09 | 242.0 | 153.0 | 69.0 | 36.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.671 | -4.4 | 0.591 | -1.489 |
| 02 | -1.818 | -4.4 | 1.338 | -4.4 |
| 03 | 0.63 | -0.628 | 0.167 | -0.898 |
| 04 | 1.355 | -3.903 | -2.584 | -3.573 |
| 05 | -3.325 | 1.361 | -3.903 | -3.126 |
| 06 | 1.349 | -3.903 | -2.484 | -3.126 |
| 07 | -0.302 | -1.389 | 1.074 | -2.484 |
| 08 | 0.703 | -0.403 | -0.135 | -0.823 |
| 09 | 0.655 | 0.2 | -0.584 | -1.215 |