We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPgr
ModelPRGR_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnRGnACRnRvWGTnCh
Best auROC (human)0.964
Best auROC (mouse)0.985
Peak sets in benchmark (human)51
Peak sets in benchmark (mouse)15
Aligned words405
TF familySteroid hormone receptors (NR3) {2.1.1}
TF subfamilyGR-like receptors (NR3C) {2.1.1.1}
MGIMGI:97567
EntrezGene
UniProt IDPRGR_MOUSE
UniProt ACQ00175
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.620560000000001
0.0005 11.309460000000001
0.0001 14.93441
GTEx tissue expression atlas Pgr expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0149.02.077.08.076.01.09.015.038.02.047.04.031.01.035.010.0
0219.07.0157.011.01.00.03.02.011.03.0137.017.01.02.029.05.0
0310.02.013.07.03.04.00.05.0124.047.0108.047.08.013.02.012.0
04127.03.08.07.059.02.00.05.097.08.05.013.053.05.05.08.0
053.0306.017.010.02.012.02.02.00.016.01.01.00.029.01.03.0
064.00.00.01.0296.011.020.036.08.00.013.00.05.01.09.01.0
0759.054.0158.042.02.04.00.06.05.04.017.016.02.06.022.08.0
0837.00.031.00.058.01.09.00.0117.01.078.01.032.00.040.00.0
0988.072.061.023.01.00.01.00.054.052.034.018.01.00.00.00.0
1023.031.08.082.033.010.01.080.028.010.01.057.04.04.01.032.0
110.04.084.00.019.04.031.01.00.02.08.01.08.03.0240.00.0
123.02.05.017.03.02.00.08.030.013.016.0304.00.00.00.02.0
1311.015.03.07.05.06.02.04.06.08.03.04.066.0101.058.0106.0
147.068.01.012.015.095.01.019.08.051.03.04.04.0108.02.07.0
156.014.010.04.050.0113.06.0153.00.02.04.01.01.014.08.019.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.653-2.3811.103-1.1211.09-2.927-1.008-0.5130.401-2.3810.612-1.770.2-2.9270.32-0.907
02-0.282-1.2481.813-0.815-2.927-4.226-2.03-2.381-0.815-2.031.677-0.391-2.927-2.3810.134-1.564
03-0.907-2.381-0.653-1.248-2.03-1.77-4.226-1.5641.5770.6121.440.612-1.121-0.653-2.381-0.73
041.601-2.03-1.121-1.2480.838-2.381-4.226-1.5641.333-1.121-1.564-0.6530.731-1.564-1.564-1.121
05-2.032.479-0.391-0.907-2.381-0.73-2.381-2.381-4.226-0.45-2.927-2.927-4.2260.134-2.927-2.03
06-1.77-4.226-4.226-2.9272.446-0.815-0.2320.348-1.121-4.226-0.653-4.226-1.564-2.927-1.008-2.927
070.8380.751.8190.501-2.381-1.77-4.226-1.394-1.564-1.77-0.391-0.45-2.381-1.394-0.138-1.121
080.375-4.2260.2-4.2260.821-2.927-1.008-4.2261.519-2.9271.115-2.9270.231-4.2260.452-4.226
091.2361.0360.871-0.094-2.927-4.226-2.927-4.2260.750.7120.291-0.335-2.927-4.226-4.226-4.226
10-0.0940.2-1.1211.1650.262-0.907-2.9271.1410.1-0.907-2.9270.804-1.77-1.77-2.9270.231
11-4.226-1.771.189-4.226-0.282-1.770.2-2.927-4.226-2.381-1.121-2.927-1.121-2.032.236-4.226
12-2.03-2.381-1.564-0.391-2.03-2.381-4.226-1.1210.168-0.653-0.452.472-4.226-4.226-4.226-2.381
13-0.815-0.513-2.03-1.248-1.564-1.394-2.381-1.77-1.394-1.121-2.03-1.770.9491.3730.8211.421
14-1.2480.979-2.927-0.73-0.5131.312-2.927-0.282-1.1210.693-2.03-1.77-1.771.44-2.381-1.248
15-1.394-0.581-0.907-1.770.6731.485-1.3941.787-4.226-2.381-1.77-2.927-2.927-0.581-1.121-0.282