We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPgr
ModelPRGR_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
A
Motif rank
1
ConsensusvRGdACAb
Best auROC (human)0.845
Best auROC (mouse)0.924
Peak sets in benchmark (human)51
Peak sets in benchmark (mouse)15
Aligned words500
TF familySteroid hormone receptors (NR3) {2.1.1}
TF subfamilyGR-like receptors (NR3C) {2.1.1.1}
MGIMGI:97567
EntrezGene
UniProt IDPRGR_MOUSE
UniProt ACQ00175
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.903124999999999
0.0005 6.499475
0.0001 7.18249
GTEx tissue expression atlas Pgr expression
Motifs in JASPAR
PCM
ACGT
01186.0111.0144.059.0
02279.01.0202.018.0
039.01.0486.04.0
04242.049.0153.056.0
05467.011.06.016.0
065.0484.09.02.0
07452.03.05.040.0
0864.097.0214.0125.0
PWM
ACGT
010.393-0.1170.14-0.737
020.796-3.9030.475-1.868
03-2.484-3.9031.349-3.126
040.655-0.9180.2-0.788
051.309-2.311-2.819-1.975
06-2.9611.345-2.484-3.573
071.276-3.325-2.961-1.114
08-0.658-0.250.5330.0