We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPROP1
(GeneCards)
ModelPROP1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
D
Motif rank
0
ConsensusWAATKGvRTTW
Best auROC (human)
Best auROC (mouse)0.921
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words500
TF familyPaired-related HD factors {3.1.3}
TF subfamilyPROP {3.1.3.20}
HGNCHGNC:9455
EntrezGeneGeneID:5626
(SSTAR profile)
UniProt IDPROP1_HUMAN
UniProt ACO75360
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.584199999999999
0.0005 6.496015
0.0001 8.41371
GTEx tissue expression atlas PROP1 expression
ReMap ChIP-seq dataset list PROP1 datasets
Motifs in JASPAR
MA0715.1 (PROP1; Homo sapiens)
PCM
ACGT
0188.022.013.0377.0
02455.03.023.019.0
03500.00.00.00.0
0415.034.023.0428.0
0538.055.086.0321.0
06239.00.0261.00.0
07245.068.0149.038.0
08376.09.074.041.0
096.02.03.0489.0
1021.047.02.0430.0
11362.027.021.090.0
PWM
ACGT
01-0.346-1.681-2.1631.096
021.283-3.325-1.64-1.818
031.377-4.4-4.4-4.4
04-2.034-1.27-1.641.222
05-1.163-0.805-0.3680.936
060.642-4.40.73-4.4
070.667-0.5990.174-1.163
081.093-2.484-0.516-1.09
09-2.819-3.573-3.3251.355
10-1.725-0.958-3.5731.227
111.055-1.489-1.725-0.324