Model info
| Transcription factor | Prop1 | ||||||||
| Model | PROP1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WAATKGvRTTW | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.921 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | PROP {3.1.3.20} | ||||||||
| MGI | MGI:109330 | ||||||||
| EntrezGene | GeneID:19127 (SSTAR profile) | ||||||||
| UniProt ID | PROP1_MOUSE | ||||||||
| UniProt AC | P97458 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Prop1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 88.0 | 22.0 | 13.0 | 377.0 |
| 02 | 455.0 | 3.0 | 23.0 | 19.0 |
| 03 | 500.0 | 0.0 | 0.0 | 0.0 |
| 04 | 15.0 | 34.0 | 23.0 | 428.0 |
| 05 | 38.0 | 55.0 | 86.0 | 321.0 |
| 06 | 239.0 | 0.0 | 261.0 | 0.0 |
| 07 | 245.0 | 68.0 | 149.0 | 38.0 |
| 08 | 376.0 | 9.0 | 74.0 | 41.0 |
| 09 | 6.0 | 2.0 | 3.0 | 489.0 |
| 10 | 21.0 | 47.0 | 2.0 | 430.0 |
| 11 | 362.0 | 27.0 | 21.0 | 90.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.346 | -1.681 | -2.163 | 1.096 |
| 02 | 1.283 | -3.325 | -1.64 | -1.818 |
| 03 | 1.377 | -4.4 | -4.4 | -4.4 |
| 04 | -2.034 | -1.27 | -1.64 | 1.222 |
| 05 | -1.163 | -0.805 | -0.368 | 0.936 |
| 06 | 0.642 | -4.4 | 0.73 | -4.4 |
| 07 | 0.667 | -0.599 | 0.174 | -1.163 |
| 08 | 1.093 | -2.484 | -0.516 | -1.09 |
| 09 | -2.819 | -3.573 | -3.325 | 1.355 |
| 10 | -1.725 | -0.958 | -3.573 | 1.227 |
| 11 | 1.055 | -1.489 | -1.725 | -0.324 |