Model info
| Transcription factor | PROX1 (GeneCards) | ||||||||
| Model | PROX1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bdbbRRGRhGKSdKRRd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 773 | ||||||||
| TF family | HD-PROS factors {3.1.7} | ||||||||
| TF subfamily | PROX-1 {3.1.7.0.1} | ||||||||
| HGNC | HGNC:9459 | ||||||||
| EntrezGene | GeneID:5629 (SSTAR profile) | ||||||||
| UniProt ID | PROX1_HUMAN | ||||||||
| UniProt AC | Q92786 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PROX1 expression | ||||||||
| ReMap ChIP-seq dataset list | PROX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 115.75 | 124.75 | 333.75 | 198.75 |
| 02 | 124.5 | 117.5 | 354.5 | 176.5 |
| 03 | 102.0 | 113.0 | 383.0 | 175.0 |
| 04 | 61.0 | 89.0 | 291.0 | 332.0 |
| 05 | 416.0 | 24.0 | 200.0 | 133.0 |
| 06 | 380.0 | 8.0 | 370.0 | 15.0 |
| 07 | 20.5 | 3.5 | 735.5 | 13.5 |
| 08 | 203.25 | 3.25 | 542.25 | 24.25 |
| 09 | 140.0 | 429.0 | 41.0 | 163.0 |
| 10 | 28.0 | 2.0 | 696.0 | 47.0 |
| 11 | 19.0 | 63.0 | 360.0 | 331.0 |
| 12 | 13.0 | 343.0 | 386.0 | 31.0 |
| 13 | 119.0 | 35.0 | 213.0 | 406.0 |
| 14 | 64.0 | 57.0 | 229.0 | 423.0 |
| 15 | 139.75 | 96.75 | 467.75 | 68.75 |
| 16 | 119.5 | 63.5 | 478.5 | 111.5 |
| 17 | 165.5 | 102.5 | 358.5 | 146.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.507 | -0.433 | 0.543 | 0.028 |
| 02 | -0.435 | -0.492 | 0.603 | -0.09 |
| 03 | -0.631 | -0.531 | 0.68 | -0.098 |
| 04 | -1.135 | -0.765 | 0.406 | 0.538 |
| 05 | 0.762 | -2.028 | 0.034 | -0.37 |
| 06 | 0.672 | -3.004 | 0.645 | -2.459 |
| 07 | -2.174 | -3.631 | 1.33 | -2.554 |
| 08 | 0.05 | -3.681 | 1.026 | -2.018 |
| 09 | -0.319 | 0.793 | -1.519 | -0.169 |
| 10 | -1.883 | -3.974 | 1.275 | -1.388 |
| 11 | -2.244 | -1.103 | 0.618 | 0.535 |
| 12 | -2.587 | 0.57 | 0.688 | -1.786 |
| 13 | -0.48 | -1.671 | 0.097 | 0.738 |
| 14 | -1.088 | -1.201 | 0.168 | 0.779 |
| 15 | -0.321 | -0.683 | 0.879 | -1.018 |
| 16 | -0.475 | -1.096 | 0.902 | -0.544 |
| 17 | -0.154 | -0.627 | 0.614 | -0.274 |