We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPRRX1
(GeneCards)
ModelPRRX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length7
Quality
D
Motif rank
0
ConsensusTAATCTG
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words4
TF familyPaired-related HD factors {3.1.3}
TF subfamilyPRRX {3.1.3.21}
HGNCHGNC:9142
EntrezGeneGeneID:5396
(SSTAR profile)
UniProt IDPRRX1_HUMAN
UniProt ACP54821
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.831005
0.0005 5.12609
0.0001 6.473435
GTEx tissue expression atlas PRRX1 expression
ReMap ChIP-seq dataset list PRRX1 datasets
Motifs in JASPAR
PCM
ACGT
010.00.00.04.0
024.00.00.00.0
034.00.00.00.0
040.01.9460.02.054
050.9733.0270.00.0
060.00.9730.03.027
070.2430.2433.270.243
PWM
ACGT
01-1.357-1.357-1.3571.172
021.172-1.357-1.357-1.357
031.172-1.357-1.357-1.357
04-1.3570.532-1.3570.578
05-0.020.918-1.357-1.357
06-1.357-0.02-1.3570.918
07-0.826-0.8260.988-0.826