Model info
| Transcription factor | Prrx1 | ||||||||
| Model | PRRX1_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 7 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TAATCTG | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 4 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | PRRX {3.1.3.21} | ||||||||
| MGI | MGI:97712 | ||||||||
| EntrezGene | GeneID:18933 (SSTAR profile) | ||||||||
| UniProt ID | PRRX1_MOUSE | ||||||||
| UniProt AC | P63013 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Prrx1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | 0.0 | 0.0 | 4.0 |
| 02 | 4.0 | 0.0 | 0.0 | 0.0 |
| 03 | 4.0 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 1.946 | 0.0 | 2.054 |
| 05 | 0.973 | 3.027 | 0.0 | 0.0 |
| 06 | 0.0 | 0.973 | 0.0 | 3.027 |
| 07 | 0.243 | 0.243 | 3.27 | 0.243 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.357 | -1.357 | -1.357 | 1.172 |
| 02 | 1.172 | -1.357 | -1.357 | -1.357 |
| 03 | 1.172 | -1.357 | -1.357 | -1.357 |
| 04 | -1.357 | 0.532 | -1.357 | 0.578 |
| 05 | -0.02 | 0.918 | -1.357 | -1.357 |
| 06 | -1.357 | -0.02 | -1.357 | 0.918 |
| 07 | -0.826 | -0.826 | 0.988 | -0.826 |