Model info
| Transcription factor | PTF1A (GeneCards) | ||||||||
| Model | PTF1A_HUMAN.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | RRCAGMTGK | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.93 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 20 | ||||||||
| Aligned words | 503 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Twist-like factors {1.2.3.2} | ||||||||
| HGNC | HGNC:23734 | ||||||||
| EntrezGene | GeneID:256297 (SSTAR profile) | ||||||||
| UniProt ID | PTF1A_HUMAN | ||||||||
| UniProt AC | Q7RTS3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PTF1A expression | ||||||||
| ReMap ChIP-seq dataset list | PTF1A datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 261.0 | 7.0 | 186.0 | 46.0 |
| 02 | 62.0 | 60.0 | 365.0 | 13.0 |
| 03 | 21.0 | 458.0 | 16.0 | 5.0 |
| 04 | 489.0 | 3.0 | 7.0 | 1.0 |
| 05 | 11.0 | 8.0 | 465.0 | 16.0 |
| 06 | 90.0 | 364.0 | 43.0 | 3.0 |
| 07 | 62.0 | 4.0 | 6.0 | 428.0 |
| 08 | 2.0 | 6.0 | 476.0 | 16.0 |
| 09 | 13.0 | 75.0 | 310.0 | 102.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.73 | -2.694 | 0.393 | -0.979 |
| 02 | -0.689 | -0.721 | 1.063 | -2.163 |
| 03 | -1.725 | 1.29 | -1.975 | -2.961 |
| 04 | 1.355 | -3.325 | -2.694 | -3.903 |
| 05 | -2.311 | -2.584 | 1.305 | -1.975 |
| 06 | -0.324 | 1.061 | -1.044 | -3.325 |
| 07 | -0.689 | -3.126 | -2.819 | 1.222 |
| 08 | -3.573 | -2.819 | 1.328 | -1.975 |
| 09 | -2.163 | -0.503 | 0.901 | -0.201 |