We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPTF1A
(GeneCards)
ModelPTF1A_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
B
Motif rank
1
ConsensusRRCAGMTGK
Best auROC (human)
Best auROC (mouse)0.93
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)20
Aligned words503
TF familyTal-related factors {1.2.3}
TF subfamilyTwist-like factors {1.2.3.2}
HGNCHGNC:23734
EntrezGeneGeneID:256297
(SSTAR profile)
UniProt IDPTF1A_HUMAN
UniProt ACQ7RTS3
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.9458649999999995
0.0005 5.635315
0.0001 7.3879649999999994
GTEx tissue expression atlas PTF1A expression
ReMap ChIP-seq dataset list PTF1A datasets
Motifs in JASPAR
PCM
ACGT
01261.07.0186.046.0
0262.060.0365.013.0
0321.0458.016.05.0
04489.03.07.01.0
0511.08.0465.016.0
0690.0364.043.03.0
0762.04.06.0428.0
082.06.0476.016.0
0913.075.0310.0102.0
PWM
ACGT
010.73-2.6940.393-0.979
02-0.689-0.7211.063-2.163
03-1.7251.29-1.975-2.961
041.355-3.325-2.694-3.903
05-2.311-2.5841.305-1.975
06-0.3241.061-1.044-3.325
07-0.689-3.126-2.8191.222
08-3.573-2.8191.328-1.975
09-2.163-0.5030.901-0.201