We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPtf1a
ModelPTF1A_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusnMCAKCTGSbnbhbhbbhhn
Best auROC (human)
Best auROC (mouse)0.969
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)20
Aligned words500
TF familyTal-related factors {1.2.3}
TF subfamilyTwist-like factors {1.2.3.2}
MGIMGI:1328312
EntrezGeneGeneID:19213
(SSTAR profile)
UniProt IDPTF1A_MOUSE
UniProt ACQ9QX98
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.63711
0.0005 10.56821
0.0001 14.599860000000001
GTEx tissue expression atlas Ptf1a expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0122.067.024.06.052.075.018.07.017.086.032.02.011.050.027.04.0
022.096.03.01.07.0265.03.03.02.093.04.02.00.016.02.01.0
038.01.02.00.0416.014.07.033.08.00.03.01.05.01.00.01.0
041.033.0320.083.00.00.08.08.00.00.011.01.00.05.025.05.0
050.01.00.00.06.029.01.02.034.0324.04.02.02.089.05.01.0
062.07.00.033.07.018.00.0418.00.00.00.010.00.02.00.03.0
070.00.09.00.01.02.022.02.00.00.00.00.04.04.0448.08.0
081.02.01.01.00.05.00.01.013.0306.095.065.00.06.01.03.0
093.04.01.06.027.0117.018.0157.015.034.021.027.01.030.010.029.0
1015.04.021.06.030.046.027.082.03.022.016.09.016.049.078.076.0
114.026.020.014.08.068.021.024.04.091.034.013.08.090.049.026.0
1210.01.05.08.051.0104.030.090.022.057.022.023.08.028.019.022.0
134.024.040.023.022.086.022.060.010.022.024.020.08.039.044.052.0
1413.09.06.016.035.046.013.077.022.039.023.046.012.042.019.082.0
1514.021.030.017.012.052.04.068.05.020.011.025.013.078.027.0103.0
1610.012.012.010.023.085.015.048.010.041.012.09.014.0117.038.044.0
1716.028.04.09.063.0133.04.055.010.041.04.022.014.053.011.033.0
1813.039.033.018.066.0118.021.050.03.012.07.01.011.063.022.023.0
1914.034.029.016.088.078.025.041.07.028.034.014.016.030.026.020.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.3460.756-0.26-1.60.5040.868-0.543-1.454-0.5991.0040.023-2.584-1.0220.465-0.144-1.975
02-2.5841.114-2.234-3.126-1.4542.127-2.234-2.234-2.5841.082-1.975-2.584-4.4-0.658-2.584-3.126
03-1.328-3.126-2.584-4.42.577-0.788-1.4540.054-1.328-4.4-2.234-3.126-1.77-3.126-4.4-3.126
04-3.1260.0542.3150.969-4.4-4.4-1.328-1.328-4.4-4.4-1.022-3.126-4.4-1.77-0.22-1.77
05-4.4-3.126-4.4-4.4-1.6-0.074-3.126-2.5840.0832.328-1.975-2.584-2.5841.039-1.77-3.126
06-2.584-1.454-4.40.054-1.454-0.543-4.42.582-4.4-4.4-4.4-1.114-4.4-2.584-4.4-2.234
07-4.4-4.4-1.215-4.4-3.126-2.584-0.346-2.584-4.4-4.4-4.4-4.4-1.975-1.9752.651-1.328
08-3.126-2.584-3.126-3.126-4.4-1.77-4.4-3.126-0.862.271.1040.726-4.4-1.6-3.126-2.234
09-2.234-1.975-3.126-1.6-0.1441.311-0.5431.604-0.7210.083-0.392-0.144-3.126-0.04-1.114-0.074
10-0.721-1.975-0.392-1.6-0.040.383-0.1440.957-2.234-0.346-0.658-1.215-0.6580.4450.9070.881
11-1.975-0.181-0.439-0.788-1.3280.771-0.392-0.26-1.9751.0610.083-0.86-1.3281.050.445-0.181
12-1.114-3.126-1.77-1.3280.4851.194-0.041.05-0.3460.595-0.346-0.302-1.328-0.108-0.49-0.346
13-1.975-0.260.244-0.302-0.3461.004-0.3460.646-1.114-0.346-0.26-0.439-1.3280.2190.3390.504
14-0.86-1.215-1.6-0.6580.1120.383-0.860.894-0.3460.219-0.3020.383-0.9380.293-0.490.957
15-0.788-0.392-0.04-0.599-0.9380.504-1.9750.771-1.77-0.439-1.022-0.22-0.860.907-0.1441.184
16-1.114-0.938-0.938-1.114-0.3020.993-0.7210.425-1.1140.269-0.938-1.215-0.7881.3110.1930.339
17-0.658-0.108-1.975-1.2150.6951.439-1.9750.56-1.1140.269-1.975-0.346-0.7880.523-1.0220.054
18-0.860.2190.054-0.5430.7411.32-0.3920.465-2.234-0.938-1.454-3.126-1.0220.695-0.346-0.302
19-0.7880.083-0.074-0.6581.0270.907-0.220.269-1.454-0.1080.083-0.788-0.658-0.04-0.181-0.439