Model info
| Transcription factor | PURA (GeneCards) | ||||||||
| Model | PURA_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RGWvKbKGnKGSMRKGK | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 13 | ||||||||
| TF family | PUR {0.0.5} | ||||||||
| TF subfamily | Pur-alpha (PURA, PUR1) {0.0.5.0.1} | ||||||||
| HGNC | HGNC:9701 | ||||||||
| EntrezGene | GeneID:5813 (SSTAR profile) | ||||||||
| UniProt ID | PURA_HUMAN | ||||||||
| UniProt AC | Q00577 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PURA expression | ||||||||
| ReMap ChIP-seq dataset list | PURA datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.068 | 1.149 | 8.634 | 1.149 |
| 02 | 1.97 | 0.788 | 10.242 | 0.0 |
| 03 | 6.697 | 0.0 | 1.97 | 4.333 |
| 04 | 5.515 | 2.495 | 3.939 | 1.051 |
| 05 | 0.919 | 0.0 | 6.697 | 5.384 |
| 06 | 0.919 | 1.838 | 6.04 | 4.202 |
| 07 | 0.0 | 1.97 | 8.141 | 2.889 |
| 08 | 1.182 | 0.0 | 9.98 | 1.838 |
| 09 | 2.758 | 1.97 | 4.202 | 4.071 |
| 10 | 2.232 | 0.0 | 7.616 | 3.152 |
| 11 | 0.0 | 0.0 | 10.505 | 2.495 |
| 12 | 0.919 | 2.889 | 7.879 | 1.313 |
| 13 | 2.101 | 8.929 | 1.97 | 0.0 |
| 14 | 5.646 | 3.02 | 4.333 | 0.0 |
| 15 | 0.919 | 0.0 | 6.828 | 5.253 |
| 16 | 4.071 | 0.0 | 8.929 | 0.0 |
| 17 | 0.46 | 1.379 | 9.52 | 1.641 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.362 | -0.776 | 0.869 | -0.776 |
| 02 | -0.399 | -1.002 | 1.029 | -1.803 |
| 03 | 0.634 | -1.803 | -0.399 | 0.246 |
| 04 | 0.459 | -0.216 | 0.163 | -0.833 |
| 05 | -0.914 | -1.803 | 0.634 | 0.437 |
| 06 | -0.914 | -0.451 | 0.541 | 0.219 |
| 07 | -1.803 | -0.399 | 0.814 | -0.097 |
| 08 | -0.758 | -1.803 | 1.004 | -0.451 |
| 09 | -0.135 | -0.399 | 0.219 | 0.191 |
| 10 | -0.303 | -1.803 | 0.752 | -0.026 |
| 11 | -1.803 | -1.803 | 1.052 | -0.216 |
| 12 | -0.914 | -0.097 | 0.784 | -0.689 |
| 13 | -0.35 | 0.9 | -0.399 | -1.803 |
| 14 | 0.48 | -0.061 | 0.246 | -1.803 |
| 15 | -0.914 | -1.803 | 0.652 | 0.415 |
| 16 | 0.191 | -1.803 | 0.9 | -1.803 |
| 17 | -1.263 | -0.656 | 0.96 | -0.533 |