We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPURA
(GeneCards)
ModelPURA_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length17
Quality
D
Motif rank
0
ConsensusRGWvKbKGnKGSMRKGK
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words13
TF familyPUR {0.0.5}
TF subfamilyPur-alpha (PURA, PUR1) {0.0.5.0.1}
HGNCHGNC:9701
EntrezGeneGeneID:5813
(SSTAR profile)
UniProt IDPURA_HUMAN
UniProt ACQ00577
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.58791
0.0005 5.24371
0.0001 6.61576
GTEx tissue expression atlas PURA expression
ReMap ChIP-seq dataset list PURA datasets
Motifs in JASPAR
PCM
ACGT
012.0681.1498.6341.149
021.970.78810.2420.0
036.6970.01.974.333
045.5152.4953.9391.051
050.9190.06.6975.384
060.9191.8386.044.202
070.01.978.1412.889
081.1820.09.981.838
092.7581.974.2024.071
102.2320.07.6163.152
110.00.010.5052.495
120.9192.8897.8791.313
132.1018.9291.970.0
145.6463.024.3330.0
150.9190.06.8285.253
164.0710.08.9290.0
170.461.3799.521.641
PWM
ACGT
01-0.362-0.7760.869-0.776
02-0.399-1.0021.029-1.803
030.634-1.803-0.3990.246
040.459-0.2160.163-0.833
05-0.914-1.8030.6340.437
06-0.914-0.4510.5410.219
07-1.803-0.3990.814-0.097
08-0.758-1.8031.004-0.451
09-0.135-0.3990.2190.191
10-0.303-1.8030.752-0.026
11-1.803-1.8031.052-0.216
12-0.914-0.0970.784-0.689
13-0.350.9-0.399-1.803
140.48-0.0610.246-1.803
15-0.914-1.8030.6520.415
160.191-1.8030.9-1.803
17-1.263-0.6560.96-0.533