We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRARA
(GeneCards)
ModelRARA_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length23
Quality
A
Motif rank
0
ConsensusvddRRbbvvRAGKTCARRRbYRn
Best auROC (human)0.954
Best auROC (mouse)0.935
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)32
Aligned words356
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRetinoic acid receptors (NR1B) {2.1.2.1}
HGNCHGNC:9864
EntrezGeneGeneID:5914
(SSTAR profile)
UniProt IDRARA_HUMAN
UniProt ACP10276
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.88851
0.0005 9.88066
0.0001 14.092210000000001
GTEx tissue expression atlas RARA expression
ReMap ChIP-seq dataset list RARA datasets
Motifs in JASPAR
MA0159.1 (RARA::RXRA; Homo sapiens)
MA0729.1 (RARA; Homo sapiens)
MA1149.1 (RARA::RXRG; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0137.07.029.07.044.09.05.023.080.08.050.013.011.03.015.06.0
0255.07.096.014.07.05.05.010.030.04.046.019.012.06.018.013.0
0310.06.082.06.06.06.04.06.027.07.0125.06.012.024.014.06.0
0418.07.023.07.030.08.00.05.067.07.0142.09.08.05.011.00.0
0513.023.045.042.011.07.01.08.014.027.030.0105.01.02.03.015.0
067.09.010.013.024.017.03.015.06.022.016.035.07.0118.031.014.0
073.04.030.07.0127.020.05.014.019.010.023.08.011.025.013.028.0
0846.014.089.011.032.010.01.016.026.05.025.015.04.029.012.012.0
0954.05.045.04.048.02.06.02.063.04.060.00.011.08.032.03.0
10137.01.037.01.017.01.01.00.0117.00.023.03.07.00.02.00.0
1117.02.0257.02.00.00.02.00.03.01.057.02.01.00.03.00.0
122.00.06.013.00.03.00.00.06.06.0154.0153.01.00.01.02.0
130.00.03.06.02.02.00.05.05.013.014.0129.02.00.02.0164.0
140.08.01.00.05.09.00.01.01.017.01.00.05.0272.07.020.0
155.00.05.01.0301.00.04.01.09.00.00.00.020.00.01.00.0
16204.028.081.022.00.00.00.00.05.02.03.00.00.00.02.00.0
1721.07.0175.06.08.01.014.07.038.05.039.04.01.011.08.02.0
1833.010.023.02.03.014.00.07.018.07.0205.06.01.09.06.03.0
1915.03.030.07.013.07.01.019.022.038.019.0155.01.07.04.06.0
204.019.015.013.07.036.01.011.03.06.013.032.05.0141.023.018.0
214.01.013.01.0167.014.08.013.014.03.021.014.021.09.022.022.0
2225.033.087.061.016.06.02.03.07.09.028.020.03.033.08.06.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.527-1.0970.286-1.0970.699-0.856-1.4130.0581.293-0.9690.826-0.501-0.663-1.88-0.361-1.243
020.921-1.0971.475-0.429-1.097-1.413-1.413-0.7550.32-1.620.743-0.13-0.579-1.243-0.183-0.501
03-0.755-1.2431.318-1.243-1.243-1.243-1.62-1.2430.216-1.0971.738-1.243-0.5790.1-0.429-1.243
04-0.183-1.0970.058-1.0970.32-0.969-4.1-1.4131.117-1.0971.865-0.856-0.969-1.413-0.663-4.1
05-0.5010.0580.7210.653-0.663-1.097-2.782-0.969-0.4290.2160.321.564-2.782-2.232-1.88-0.361
06-1.097-0.856-0.755-0.5010.1-0.239-1.88-0.361-1.2430.014-0.2980.472-1.0971.680.352-0.429
07-1.88-1.620.32-1.0971.754-0.08-1.413-0.429-0.13-0.7550.058-0.969-0.6630.14-0.5010.252
080.743-0.4291.399-0.6630.384-0.755-2.782-0.2980.179-1.4130.14-0.361-1.620.286-0.579-0.579
090.902-1.4130.721-1.620.785-2.232-1.243-2.2321.055-1.621.007-4.1-0.663-0.9690.384-1.88
101.829-2.7820.527-2.782-0.239-2.782-2.782-4.11.672-4.10.058-1.88-1.097-4.1-2.232-4.1
11-0.239-2.2322.457-2.232-4.1-4.1-2.232-4.1-1.88-2.7820.956-2.232-2.782-4.1-1.88-4.1
12-2.232-4.1-1.243-0.501-4.1-1.88-4.1-4.1-1.243-1.2431.9461.939-2.782-4.1-2.782-2.232
13-4.1-4.1-1.88-1.243-2.232-2.232-4.1-1.413-1.413-0.501-0.4291.769-2.232-4.1-2.2322.009
14-4.1-0.969-2.782-4.1-1.413-0.856-4.1-2.782-2.782-0.239-2.782-4.1-1.4132.514-1.097-0.08
15-1.413-4.1-1.413-2.7822.615-4.1-1.62-2.782-0.856-4.1-4.1-4.1-0.08-4.1-2.782-4.1
162.2260.2521.3050.014-4.1-4.1-4.1-4.1-1.413-2.232-1.88-4.1-4.1-4.1-2.232-4.1
17-0.032-1.0972.073-1.243-0.969-2.782-0.429-1.0970.554-1.4130.579-1.62-2.782-0.663-0.969-2.232
180.414-0.7550.058-2.232-1.88-0.429-4.1-1.097-0.183-1.0972.231-1.243-2.782-0.856-1.243-1.88
19-0.361-1.880.32-1.097-0.501-1.097-2.782-0.130.0140.554-0.131.952-2.782-1.097-1.62-1.243
20-1.62-0.13-0.361-0.501-1.0970.5-2.782-0.663-1.88-1.243-0.5010.384-1.4131.8580.058-0.183
21-1.62-2.782-0.501-2.7822.027-0.429-0.969-0.501-0.429-1.88-0.032-0.429-0.032-0.8560.0140.014
220.140.4141.3771.023-0.298-1.243-2.232-1.88-1.097-0.8560.252-0.08-1.880.414-0.969-1.243