We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRARA
(GeneCards)
ModelRARA_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
1
ConsensusvAGGKCAvvv
Best auROC (human)0.948
Best auROC (mouse)0.874
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)32
Aligned words501
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRetinoic acid receptors (NR1B) {2.1.2.1}
HGNCHGNC:9864
EntrezGeneGeneID:5914
(SSTAR profile)
UniProt IDRARA_HUMAN
UniProt ACP10276
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.706485
0.0005 5.747809999999999
0.0001 7.552099999999999
GTEx tissue expression atlas RARA expression
ReMap ChIP-seq dataset list RARA datasets
Motifs in JASPAR
PCM
ACGT
01173.0150.0168.09.0
02415.05.077.03.0
037.00.0490.03.0
045.04.0486.05.0
0517.030.094.0359.0
061.0473.020.06.0
07486.03.09.02.0
0872.0125.0275.028.0
09169.085.0217.029.0
1075.081.0274.070.0
PWM
ACGT
010.3220.180.293-2.484
021.191-2.961-0.477-3.325
03-2.694-4.41.357-3.325
04-2.961-3.1261.349-2.961
05-1.92-1.389-0.2811.047
06-3.9031.322-1.77-2.819
071.349-3.325-2.484-3.573
08-0.5430.00.782-1.454
090.298-0.380.546-1.421
10-0.503-0.4270.778-0.57