We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRARA
(GeneCards)
ModelRARA_HUMAN.H11MO.2.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length17
Quality
A
Motif rank
2
ConsensusRGKTSAnvvdvRSKKSR
Best auROC (human)0.806
Best auROC (mouse)0.844
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)32
Aligned words122
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRetinoic acid receptors (NR1B) {2.1.2.1}
HGNCHGNC:9864
EntrezGeneGeneID:5914
(SSTAR profile)
UniProt IDRARA_HUMAN
UniProt ACP10276
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.64091
0.0005 5.478859999999999
0.0001 7.21771
GTEx tissue expression atlas RARA expression
ReMap ChIP-seq dataset list RARA datasets
Motifs in JASPAR
PCM
ACGT
0167.7811.97146.5954.654
020.00.419119.0711.509
035.9243.52277.60533.949
045.7020.8399.95104.51
050.75588.77821.9669.501
06106.1870.013.3041.509
0727.47136.94326.01630.57
0820.98546.13839.73514.142
0933.56323.02748.2316.18
1053.62212.21438.70416.461
1129.7930.26452.2258.721
1271.78515.92821.79811.488
138.77613.55593.8354.834
1412.0756.59573.15629.173
1516.8813.2217.60673.294
1611.89984.21716.2018.683
1787.72610.10513.8499.321
PWM
ACGT
010.785-2.2950.419-1.681
02-3.267-2.9671.341-2.452
03-1.485-1.8960.9190.111
04-1.517-2.737-1.0371.212
05-2.7791.051-0.306-1.078
061.228-3.267-0.774-2.452
07-0.0930.193-0.1450.01
08-0.3490.4090.264-0.718
090.1-0.2610.452-0.593
100.556-0.8520.238-0.577
11-0.0150.00.53-1.154
120.842-0.608-0.313-0.908
13-1.148-0.7571.106-1.651
14-0.863-1.3950.86-0.035
15-0.554-0.78-0.5140.862
16-0.8760.999-0.592-1.158
171.039-1.023-0.737-1.095