We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRara
ModelRARA_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length23
Quality
A
Motif rank
0
ConsensusvddvdbbvdRAGKTCARRKbYRb
Best auROC (human)0.863
Best auROC (mouse)0.945
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)32
Aligned words498
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRetinoic acid receptors (NR1B) {2.1.2.1}
MGIMGI:97856
EntrezGeneGeneID:19401
(SSTAR profile)
UniProt IDRARA_MOUSE
UniProt ACP11416
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.80151
0.0005 9.909010000000002
0.0001 14.36751
GTEx tissue expression atlas Rara expression
Motifs in JASPAR
MA0159.1 (RARA::RXRA; Homo sapiens)
MA0729.1 (RARA; Homo sapiens)
MA1149.1 (RARA::RXRG; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0153.09.056.011.027.09.012.019.0110.08.097.025.017.04.033.08.0
0253.013.0125.016.09.05.05.011.037.027.071.063.022.06.013.022.0
0320.010.082.09.09.019.08.015.046.016.0134.018.013.040.037.022.0
0423.06.038.021.060.06.03.016.090.014.0123.034.016.012.021.015.0
0526.035.045.083.010.010.02.016.022.035.030.098.02.024.019.041.0
0613.017.018.012.027.040.012.025.023.031.024.018.08.0164.033.033.0
0717.014.033.07.0175.037.014.026.022.018.039.08.021.033.017.017.0
0867.015.0137.016.050.08.04.040.036.017.024.026.014.01.023.020.0
0967.011.087.02.028.06.07.00.072.08.0102.06.020.09.071.02.0
10174.00.011.02.027.03.04.00.0231.02.031.03.07.03.00.00.0
1116.04.0417.02.02.01.05.00.05.00.041.00.00.01.04.00.0
121.00.010.012.01.00.04.01.03.011.0193.0260.00.00.01.01.0
131.00.01.03.03.02.02.04.012.021.017.0158.00.011.00.0263.0
143.09.04.00.05.024.04.01.01.017.02.00.03.0403.019.03.0
157.03.02.00.0445.02.03.03.029.00.00.00.04.00.00.00.0
16361.023.078.023.05.00.00.00.03.00.02.00.01.00.02.00.0
1728.09.0328.05.06.06.07.04.023.014.039.06.04.03.014.02.0
186.010.036.09.08.05.08.011.022.09.0338.019.00.04.07.06.0
199.09.010.08.09.07.04.08.038.092.044.0215.08.012.011.014.0
2016.025.018.05.03.084.010.023.015.023.018.013.07.0201.07.030.0
2110.07.019.05.0262.026.015.030.026.07.016.04.025.06.030.010.0
2232.048.0137.0106.020.05.05.016.09.023.032.016.010.013.017.09.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.527-1.2110.582-1.018-0.14-1.211-0.934-0.4861.254-1.3241.128-0.216-0.595-1.9710.058-1.324
020.527-0.8561.381-0.654-1.211-1.766-1.766-1.0180.171-0.140.8180.699-0.342-1.596-0.856-0.342
03-0.435-1.110.961-1.211-1.211-0.486-1.324-0.7170.387-0.6541.45-0.539-0.8560.2480.171-0.342
04-0.298-1.5960.197-0.3880.65-1.596-2.23-0.6541.054-0.7841.3650.087-0.654-0.934-0.388-0.717
05-0.1770.1160.3650.973-1.11-1.11-2.58-0.654-0.3420.116-0.0361.139-2.58-0.256-0.4860.273
06-0.856-0.595-0.539-0.934-0.140.248-0.934-0.216-0.298-0.004-0.256-0.539-1.3241.6520.0580.058
07-0.595-0.7840.058-1.4511.7170.171-0.784-0.177-0.342-0.5390.223-1.324-0.3880.058-0.595-0.595
080.76-0.7171.472-0.6540.469-1.324-1.9710.2480.144-0.595-0.256-0.177-0.784-3.122-0.298-0.435
090.76-1.0181.02-2.58-0.104-1.596-1.451-4.3970.832-1.3241.178-1.596-0.435-1.2110.818-2.58
101.711-4.397-1.018-2.58-0.14-2.23-1.971-4.3971.994-2.58-0.004-2.23-1.451-2.23-4.397-4.397
11-0.654-1.9712.584-2.58-2.58-3.122-1.766-4.397-1.766-4.3970.273-4.397-4.397-3.122-1.971-4.397
12-3.122-4.397-1.11-0.934-3.122-4.397-1.971-3.122-2.23-1.0181.8142.112-4.397-4.397-3.122-3.122
13-3.122-4.397-3.122-2.23-2.23-2.58-2.58-1.971-0.934-0.388-0.5951.615-4.397-1.018-4.3972.123
14-2.23-1.211-1.971-4.397-1.766-0.256-1.971-3.122-3.122-0.595-2.58-4.397-2.232.549-0.486-2.23
15-1.451-2.23-2.58-4.3972.649-2.58-2.23-2.23-0.07-4.397-4.397-4.397-1.971-4.397-4.397-4.397
162.44-0.2980.911-0.298-1.766-4.397-4.397-4.397-2.23-4.397-2.58-4.397-3.122-4.397-2.58-4.397
17-0.104-1.2112.344-1.766-1.596-1.596-1.451-1.971-0.298-0.7840.223-1.596-1.971-2.23-0.784-2.58
18-1.596-1.110.144-1.211-1.324-1.766-1.324-1.018-0.342-1.2112.374-0.486-4.397-1.971-1.451-1.596
19-1.211-1.211-1.11-1.324-1.211-1.451-1.971-1.3240.1971.0760.3431.922-1.324-0.934-1.018-0.784
20-0.654-0.216-0.539-1.766-2.230.985-1.11-0.298-0.717-0.298-0.539-0.856-1.4511.855-1.451-0.036
21-1.11-1.451-0.486-1.7662.119-0.177-0.717-0.036-0.177-1.451-0.654-1.971-0.216-1.596-0.036-1.11
220.0270.4291.4721.217-0.435-1.766-1.766-0.654-1.211-0.2980.027-0.654-1.11-0.856-0.595-1.211