Model info
| Transcription factor | Rara | ||||||||
| Model | RARA_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RRdYYRdRAGKTCAAGGWSR | ||||||||
| Best auROC (human) | 0.753 | ||||||||
| Best auROC (mouse) | 0.906 | ||||||||
| Peak sets in benchmark (human) | 29 | ||||||||
| Peak sets in benchmark (mouse) | 32 | ||||||||
| Aligned words | 447 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Retinoic acid receptors (NR1B) {2.1.2.1} | ||||||||
| MGI | MGI:97856 | ||||||||
| EntrezGene | GeneID:19401 (SSTAR profile) | ||||||||
| UniProt ID | RARA_MOUSE | ||||||||
| UniProt AC | P11416 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rara expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 110.0 | 22.0 | 248.0 | 65.0 |
| 02 | 59.0 | 50.0 | 314.0 | 22.0 |
| 03 | 134.0 | 34.0 | 222.0 | 55.0 |
| 04 | 31.0 | 62.0 | 50.0 | 302.0 |
| 05 | 29.0 | 303.0 | 53.0 | 60.0 |
| 06 | 278.0 | 58.0 | 66.0 | 43.0 |
| 07 | 145.0 | 38.0 | 199.0 | 63.0 |
| 08 | 222.0 | 15.0 | 203.0 | 5.0 |
| 09 | 377.0 | 1.0 | 64.0 | 3.0 |
| 10 | 11.0 | 12.0 | 417.0 | 5.0 |
| 11 | 12.0 | 3.0 | 119.0 | 311.0 |
| 12 | 1.0 | 10.0 | 11.0 | 423.0 |
| 13 | 6.0 | 423.0 | 10.0 | 6.0 |
| 14 | 435.0 | 3.0 | 6.0 | 1.0 |
| 15 | 375.0 | 13.0 | 49.0 | 8.0 |
| 16 | 31.0 | 7.0 | 390.0 | 17.0 |
| 17 | 24.0 | 20.0 | 385.0 | 16.0 |
| 18 | 46.0 | 43.0 | 43.0 | 313.0 |
| 19 | 19.0 | 351.0 | 40.0 | 35.0 |
| 20 | 351.0 | 16.0 | 40.0 | 38.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.011 | -1.567 | 0.794 | -0.528 |
| 02 | -0.622 | -0.783 | 1.029 | -1.567 |
| 03 | 0.184 | -1.155 | 0.684 | -0.691 |
| 04 | -1.243 | -0.574 | -0.783 | 0.99 |
| 05 | -1.307 | 0.993 | -0.727 | -0.606 |
| 06 | 0.908 | -0.639 | -0.513 | -0.929 |
| 07 | 0.262 | -1.048 | 0.576 | -0.558 |
| 08 | 0.684 | -1.921 | 0.595 | -2.85 |
| 09 | 1.211 | -3.799 | -0.543 | -3.216 |
| 10 | -2.198 | -2.121 | 1.311 | -2.85 |
| 11 | -2.121 | -3.216 | 0.066 | 1.019 |
| 12 | -3.799 | -2.281 | -2.198 | 1.326 |
| 13 | -2.707 | 1.326 | -2.281 | -2.707 |
| 14 | 1.353 | -3.216 | -2.707 | -3.799 |
| 15 | 1.206 | -2.05 | -0.803 | -2.472 |
| 16 | -1.243 | -2.582 | 1.245 | -1.806 |
| 17 | -1.486 | -1.656 | 1.232 | -1.862 |
| 18 | -0.864 | -0.929 | -0.929 | 1.026 |
| 19 | -1.704 | 1.14 | -0.999 | -1.127 |
| 20 | 1.14 | -1.862 | -0.999 | -1.048 |