We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRara
ModelRARA_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
1
ConsensusvdddvdbbvdRAGKTCARRR
Best auROC (human)0.951
Best auROC (mouse)0.927
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)32
Aligned words499
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRetinoic acid receptors (NR1B) {2.1.2.1}
MGIMGI:97856
EntrezGeneGeneID:19401
(SSTAR profile)
UniProt IDRARA_MOUSE
UniProt ACP11416
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.377610000000001
0.0005 5.41631
0.0001 7.554460000000001
GTEx tissue expression atlas Rara expression
Motifs in JASPAR
PCM
ACGT
01130.062.0275.032.0
02105.056.0275.063.0
03185.028.0232.054.0
04142.046.0216.095.0
0584.0104.0277.034.0
06197.047.0178.077.0
0751.078.0122.0248.0
0855.0253.0130.061.0
09221.0115.096.067.0
10214.034.0177.074.0
11183.025.0274.017.0
12405.03.084.07.0
1321.00.0474.04.0
1410.05.0254.0230.0
158.023.033.0435.0
161.0468.020.010.0
17491.00.02.06.0
18281.054.0128.036.0
1989.026.0349.035.0
2056.043.0368.032.0
PWM
ACGT
010.041-0.6870.784-1.326
02-0.17-0.7860.784-0.671
030.39-1.4520.615-0.821
040.128-0.9770.544-0.269
05-0.39-0.1790.791-1.268
060.452-0.9560.352-0.475
07-0.877-0.462-0.0220.681
08-0.8040.7010.041-0.703
090.566-0.08-0.258-0.611
100.535-1.2680.346-0.514
110.379-1.560.78-1.918
121.169-3.323-0.39-2.692
13-1.723-4.3981.326-3.124
14-2.392-2.9590.7050.606
15-2.582-1.638-1.2961.24
16-3.9011.313-1.768-2.392
171.361-4.398-3.571-2.817
180.805-0.8210.025-1.213
19-0.333-1.5231.021-1.24
20-0.786-1.0421.074-1.326