Model info
| Transcription factor | Rara | ||||||||
| Model | RARA_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vdddvdbbvdRAGKTCARRR | ||||||||
| Best auROC (human) | 0.951 | ||||||||
| Best auROC (mouse) | 0.927 | ||||||||
| Peak sets in benchmark (human) | 29 | ||||||||
| Peak sets in benchmark (mouse) | 32 | ||||||||
| Aligned words | 499 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Retinoic acid receptors (NR1B) {2.1.2.1} | ||||||||
| MGI | MGI:97856 | ||||||||
| EntrezGene | GeneID:19401 (SSTAR profile) | ||||||||
| UniProt ID | RARA_MOUSE | ||||||||
| UniProt AC | P11416 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rara expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 130.0 | 62.0 | 275.0 | 32.0 |
| 02 | 105.0 | 56.0 | 275.0 | 63.0 |
| 03 | 185.0 | 28.0 | 232.0 | 54.0 |
| 04 | 142.0 | 46.0 | 216.0 | 95.0 |
| 05 | 84.0 | 104.0 | 277.0 | 34.0 |
| 06 | 197.0 | 47.0 | 178.0 | 77.0 |
| 07 | 51.0 | 78.0 | 122.0 | 248.0 |
| 08 | 55.0 | 253.0 | 130.0 | 61.0 |
| 09 | 221.0 | 115.0 | 96.0 | 67.0 |
| 10 | 214.0 | 34.0 | 177.0 | 74.0 |
| 11 | 183.0 | 25.0 | 274.0 | 17.0 |
| 12 | 405.0 | 3.0 | 84.0 | 7.0 |
| 13 | 21.0 | 0.0 | 474.0 | 4.0 |
| 14 | 10.0 | 5.0 | 254.0 | 230.0 |
| 15 | 8.0 | 23.0 | 33.0 | 435.0 |
| 16 | 1.0 | 468.0 | 20.0 | 10.0 |
| 17 | 491.0 | 0.0 | 2.0 | 6.0 |
| 18 | 281.0 | 54.0 | 128.0 | 36.0 |
| 19 | 89.0 | 26.0 | 349.0 | 35.0 |
| 20 | 56.0 | 43.0 | 368.0 | 32.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.041 | -0.687 | 0.784 | -1.326 |
| 02 | -0.17 | -0.786 | 0.784 | -0.671 |
| 03 | 0.39 | -1.452 | 0.615 | -0.821 |
| 04 | 0.128 | -0.977 | 0.544 | -0.269 |
| 05 | -0.39 | -0.179 | 0.791 | -1.268 |
| 06 | 0.452 | -0.956 | 0.352 | -0.475 |
| 07 | -0.877 | -0.462 | -0.022 | 0.681 |
| 08 | -0.804 | 0.701 | 0.041 | -0.703 |
| 09 | 0.566 | -0.08 | -0.258 | -0.611 |
| 10 | 0.535 | -1.268 | 0.346 | -0.514 |
| 11 | 0.379 | -1.56 | 0.78 | -1.918 |
| 12 | 1.169 | -3.323 | -0.39 | -2.692 |
| 13 | -1.723 | -4.398 | 1.326 | -3.124 |
| 14 | -2.392 | -2.959 | 0.705 | 0.606 |
| 15 | -2.582 | -1.638 | -1.296 | 1.24 |
| 16 | -3.901 | 1.313 | -1.768 | -2.392 |
| 17 | 1.361 | -4.398 | -3.571 | -2.817 |
| 18 | 0.805 | -0.821 | 0.025 | -1.213 |
| 19 | -0.333 | -1.523 | 1.021 | -1.24 |
| 20 | -0.786 | -1.042 | 1.074 | -1.326 |