Model info
| Transcription factor | Rara | ||||||||
| Model | RARA_MOUSE.H11MO.2.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 2 | ||||||||
| Consensus | RGKTSAnvvdvRSKKSR | ||||||||
| Best auROC (human) | 0.806 | ||||||||
| Best auROC (mouse) | 0.844 | ||||||||
| Peak sets in benchmark (human) | 29 | ||||||||
| Peak sets in benchmark (mouse) | 32 | ||||||||
| Aligned words | 122 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Retinoic acid receptors (NR1B) {2.1.2.1} | ||||||||
| MGI | MGI:97856 | ||||||||
| EntrezGene | GeneID:19401 (SSTAR profile) | ||||||||
| UniProt ID | RARA_MOUSE | ||||||||
| UniProt AC | P11416 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rara expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 67.781 | 1.971 | 46.595 | 4.654 |
| 02 | 0.0 | 0.419 | 119.071 | 1.509 |
| 03 | 5.924 | 3.522 | 77.605 | 33.949 |
| 04 | 5.702 | 0.839 | 9.95 | 104.51 |
| 05 | 0.755 | 88.778 | 21.966 | 9.501 |
| 06 | 106.187 | 0.0 | 13.304 | 1.509 |
| 07 | 27.471 | 36.943 | 26.016 | 30.57 |
| 08 | 20.985 | 46.138 | 39.735 | 14.142 |
| 09 | 33.563 | 23.027 | 48.23 | 16.18 |
| 10 | 53.622 | 12.214 | 38.704 | 16.461 |
| 11 | 29.79 | 30.264 | 52.225 | 8.721 |
| 12 | 71.785 | 15.928 | 21.798 | 11.488 |
| 13 | 8.776 | 13.555 | 93.835 | 4.834 |
| 14 | 12.075 | 6.595 | 73.156 | 29.173 |
| 15 | 16.88 | 13.22 | 17.606 | 73.294 |
| 16 | 11.899 | 84.217 | 16.201 | 8.683 |
| 17 | 87.726 | 10.105 | 13.849 | 9.321 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.785 | -2.295 | 0.419 | -1.681 |
| 02 | -3.267 | -2.967 | 1.341 | -2.452 |
| 03 | -1.485 | -1.896 | 0.919 | 0.111 |
| 04 | -1.517 | -2.737 | -1.037 | 1.212 |
| 05 | -2.779 | 1.051 | -0.306 | -1.078 |
| 06 | 1.228 | -3.267 | -0.774 | -2.452 |
| 07 | -0.093 | 0.193 | -0.145 | 0.01 |
| 08 | -0.349 | 0.409 | 0.264 | -0.718 |
| 09 | 0.1 | -0.261 | 0.452 | -0.593 |
| 10 | 0.556 | -0.852 | 0.238 | -0.577 |
| 11 | -0.015 | 0.0 | 0.53 | -1.154 |
| 12 | 0.842 | -0.608 | -0.313 | -0.908 |
| 13 | -1.148 | -0.757 | 1.106 | -1.651 |
| 14 | -0.863 | -1.395 | 0.86 | -0.035 |
| 15 | -0.554 | -0.78 | -0.514 | 0.862 |
| 16 | -0.876 | 0.999 | -0.592 | -1.158 |
| 17 | 1.039 | -1.023 | -0.737 | -1.095 |