RARB_MOUSE.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

Model

RARB_MOUSE.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

11

Quality

D

Motif rank

0

Consensus

vAGGTCAnvRv

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

25

TF family

Thyroid hormone receptor-related factors (NR1) {2.1.2}

TF subfamily

Retinoic acid receptors (NR1B) {2.1.2.1}

MGI

EntrezGene

GeneID:218772
(SSTAR profile)

UniProt ID

UniProt AC

P22605
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.06644
0.0005	5.644075
0.0001	7.6521349999999995

GTEx tissue expression atlas

Rarb expression

Motifs in JASPAR

MA0857.1 (Rarb; Mus musculus)

PCM

	A	C	G	T
01	3.825	6.722	9.909	0.811
02	17.442	0.0	3.825	0.0
03	0.0	0.0	21.267	0.0
04	0.0	0.0	20.224	1.043
05	0.0	0.0	0.0	21.267
06	0.0	21.267	0.0	0.0
07	21.267	0.0	0.0	0.0
08	4.752	4.288	8.402	3.825
09	6.722	4.288	8.055	2.202
10	6.954	5.331	8.982	0.0
11	5.36	6.983	6.809	2.115

PWM

	A	C	G	T
01	-0.282	0.208	0.563	-1.351
02	1.097	-2.074	-0.282	-2.074
03	-2.074	-2.074	1.287	-2.074
04	-2.074	-2.074	1.239	-1.213
05	-2.074	-2.074	-2.074	1.287
06	-2.074	1.287	-2.074	-2.074
07	1.287	-2.074	-2.074	-2.074
08	-0.098	-0.185	0.41	-0.282
09	0.208	-0.185	0.372	-0.718
10	0.238	0.002	0.472	-2.074
11	0.007	0.242	0.219	-0.748