We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRARG
(GeneCards)
ModelRARG_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length22
Quality
A
Motif rank
0
ConsensusnvRKKYCAbnbbRhYCYnbnbn
Best auROC (human)0.815
Best auROC (mouse)
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)
Aligned words508
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRetinoic acid receptors (NR1B) {2.1.2.1}
HGNCHGNC:9866
EntrezGeneGeneID:5916
(SSTAR profile)
UniProt IDRARG_HUMAN
UniProt ACP13631
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.62536
0.0005 10.36696
0.0001 14.00941
GTEx tissue expression atlas RARG expression
ReMap ChIP-seq dataset list RARG datasets
Motifs in JASPAR
MA0859.1 (Rarg; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0120.042.044.09.024.059.018.021.09.028.036.08.09.046.0117.09.0
0246.01.015.00.0150.016.06.03.0170.017.020.08.022.04.017.04.0
0319.03.0252.0114.05.01.014.018.08.01.035.014.01.00.08.06.0
042.01.030.00.02.01.01.01.03.08.0271.027.03.03.055.091.0
050.03.01.06.01.04.01.07.012.041.024.0280.04.077.02.036.0
061.013.01.02.02.0119.02.02.00.028.00.00.05.0311.013.00.0
078.00.00.00.0430.06.019.016.011.00.02.03.03.01.00.00.0
0837.0187.093.0135.01.04.00.02.02.08.08.03.02.09.01.07.0
0913.08.017.04.069.065.020.054.014.036.034.018.019.023.023.082.0
1028.028.050.09.024.066.017.025.011.033.030.020.03.0105.034.016.0
1124.06.010.026.029.042.055.0106.016.022.014.079.03.011.08.048.0
1212.06.052.02.034.05.036.06.056.08.020.03.025.015.0207.012.0
1325.012.021.069.021.03.02.08.0134.099.022.060.05.07.03.08.0
144.0159.07.015.07.075.01.038.04.025.02.017.07.035.014.089.0
151.017.02.02.017.0258.02.017.02.020.01.01.012.0124.09.014.0
163.013.05.011.026.0202.06.0185.00.03.01.010.02.012.08.012.0
173.09.013.06.0133.032.019.046.06.05.03.06.033.036.083.066.0
1816.04.079.076.015.020.012.035.011.022.067.018.013.027.064.020.0
1914.015.018.08.019.027.06.021.031.059.095.037.05.020.039.085.0
2015.018.022.014.017.048.03.053.031.050.030.047.06.086.023.036.0
2114.017.029.09.044.068.044.046.021.021.020.016.011.035.072.032.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.4370.2940.341-1.213-0.2580.632-0.541-0.39-1.213-0.1060.142-1.326-1.2130.3851.313-1.213
020.385-3.124-0.719-4.3981.561-0.656-1.598-2.2321.686-0.597-0.437-1.326-0.344-1.973-0.597-1.973
03-0.488-2.2322.0791.287-1.768-3.124-0.786-0.541-1.326-3.1240.114-0.786-3.124-4.398-1.326-1.598
04-2.582-3.124-0.038-4.398-2.582-3.124-3.124-3.124-2.232-1.3262.151-0.142-2.232-2.2320.5621.063
05-4.398-2.232-3.124-1.598-3.124-1.973-3.124-1.452-0.9360.271-0.2582.184-1.9730.896-2.5820.142
06-3.124-0.858-3.124-2.582-2.5821.33-2.582-2.582-4.398-0.106-4.398-4.398-1.7682.289-0.858-4.398
07-1.326-4.398-4.398-4.3982.612-1.598-0.488-0.656-1.02-4.398-2.582-2.232-2.232-3.124-4.398-4.398
080.1691.7811.0841.456-3.124-1.973-4.398-2.582-2.582-1.326-1.326-2.232-2.582-1.213-3.124-1.452
09-0.858-1.326-0.597-1.9730.7870.728-0.4370.544-0.7860.1420.085-0.541-0.488-0.3-0.30.959
10-0.106-0.1060.467-1.213-0.2580.743-0.597-0.218-1.020.056-0.038-0.437-2.2321.2050.085-0.656
11-0.258-1.598-1.112-0.179-0.0720.2940.5621.215-0.656-0.344-0.7860.922-2.232-1.02-1.3260.427
12-0.936-1.5980.506-2.5820.085-1.7680.142-1.5980.58-1.326-0.437-2.232-0.218-0.7191.882-0.936
13-0.218-0.936-0.390.787-0.39-2.232-2.582-1.3261.4481.147-0.3440.648-1.768-1.452-2.232-1.326
14-1.9731.619-1.452-0.719-1.4520.87-3.1240.195-1.973-0.218-2.582-0.597-1.4520.114-0.7861.041
15-3.124-0.597-2.582-2.582-0.5972.102-2.582-0.597-2.582-0.437-3.124-3.124-0.9361.371-1.213-0.786
16-2.232-0.858-1.768-1.02-0.1791.858-1.5981.77-4.398-2.232-3.124-1.112-2.582-0.936-1.326-0.936
17-2.232-1.213-0.858-1.5981.4410.025-0.4880.385-1.598-1.768-2.232-1.5980.0560.1420.9710.743
18-0.656-1.9730.9220.883-0.719-0.437-0.9360.114-1.02-0.3440.758-0.541-0.858-0.1420.713-0.437
19-0.786-0.719-0.541-1.326-0.488-0.142-1.598-0.39-0.0060.6321.1060.169-1.768-0.4370.2210.995
20-0.719-0.541-0.344-0.786-0.5970.427-2.2320.525-0.0060.467-0.0380.406-1.5981.006-0.30.142
21-0.786-0.597-0.072-1.2130.3410.7730.3410.385-0.39-0.39-0.437-0.656-1.020.1140.830.025