We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRARG
(GeneCards)
ModelRARG_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
B
Motif rank
1
ConsensusvAGGKCAn
Best auROC (human)0.815
Best auROC (mouse)
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)
Aligned words394
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRetinoic acid receptors (NR1B) {2.1.2.1}
HGNCHGNC:9866
EntrezGeneGeneID:5916
(SSTAR profile)
UniProt IDRARG_HUMAN
UniProt ACP13631
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.03162
0.0005 6.013199999999999
0.0001 7.63293
GTEx tissue expression atlas RARG expression
ReMap ChIP-seq dataset list RARG datasets
Motifs in JASPAR
PCM
ACGT
01111.0131.0137.014.0
02292.04.095.02.0
032.00.0390.01.0
042.01.0376.014.0
0531.04.072.0286.0
062.0381.010.00.0
07383.03.06.01.0
0840.0109.0204.040.0
PWM
ACGT
010.120.2840.328-1.862
021.079-2.899-0.033-3.352
03-3.352-4.2021.367-3.689
04-3.352-3.6891.331-1.862
05-1.122-2.899-0.3051.059
06-3.3521.344-2.161-4.202
071.349-3.1-2.589-3.689
08-0.8770.1020.723-0.877