Transcription factor | RARG (GeneCards) | ||||||||
Model | RARG_HUMAN.H11MO.1.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 8 | ||||||||
Quality | B | ||||||||
Motif rank | 1 | ||||||||
Consensus | vAGGKCAn | ||||||||
Best auROC (human) | 0.815 | ||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | 12 | ||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 394 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
TF subfamily | Retinoic acid receptors (NR1B) {2.1.2.1} | ||||||||
HGNC | HGNC:9866 | ||||||||
EntrezGene | GeneID:5916 (SSTAR profile) | ||||||||
UniProt ID | RARG_HUMAN | ||||||||
UniProt AC | P13631 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | RARG expression | ||||||||
ReMap ChIP-seq dataset list | RARG datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 111.0 | 131.0 | 137.0 | 14.0 |
02 | 292.0 | 4.0 | 95.0 | 2.0 |
03 | 2.0 | 0.0 | 390.0 | 1.0 |
04 | 2.0 | 1.0 | 376.0 | 14.0 |
05 | 31.0 | 4.0 | 72.0 | 286.0 |
06 | 2.0 | 381.0 | 10.0 | 0.0 |
07 | 383.0 | 3.0 | 6.0 | 1.0 |
08 | 40.0 | 109.0 | 204.0 | 40.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.12 | 0.284 | 0.328 | -1.862 |
02 | 1.079 | -2.899 | -0.033 | -3.352 |
03 | -3.352 | -4.202 | 1.367 | -3.689 |
04 | -3.352 | -3.689 | 1.331 | -1.862 |
05 | -1.122 | -2.899 | -0.305 | 1.059 |
06 | -3.352 | 1.344 | -2.161 | -4.202 |
07 | 1.349 | -3.1 | -2.589 | -3.689 |
08 | -0.877 | 0.102 | 0.723 | -0.877 |