Model info
| Transcription factor | Rarg | ||||||||
| Model | RARG_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 18 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RRGTCAvvvhSvMMbddv | ||||||||
| Best auROC (human) | 0.827 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 12 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Retinoic acid receptors (NR1B) {2.1.2.1} | ||||||||
| MGI | MGI:97858 | ||||||||
| EntrezGene | GeneID:19411 (SSTAR profile) | ||||||||
| UniProt ID | RARG_MOUSE | ||||||||
| UniProt AC | P18911 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rarg expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 288.0 | 9.0 | 194.0 | 9.0 |
| 02 | 88.0 | 3.0 | 378.0 | 31.0 |
| 03 | 70.0 | 3.0 | 423.0 | 4.0 |
| 04 | 32.0 | 5.0 | 67.0 | 396.0 |
| 05 | 7.0 | 444.0 | 18.0 | 31.0 |
| 06 | 460.0 | 6.0 | 26.0 | 8.0 |
| 07 | 93.0 | 165.0 | 188.0 | 54.0 |
| 08 | 215.0 | 146.0 | 121.0 | 18.0 |
| 09 | 149.0 | 93.0 | 220.0 | 38.0 |
| 10 | 103.0 | 63.0 | 54.0 | 280.0 |
| 11 | 47.0 | 83.0 | 343.0 | 27.0 |
| 12 | 204.0 | 110.0 | 115.0 | 71.0 |
| 13 | 114.0 | 308.0 | 48.0 | 30.0 |
| 14 | 148.0 | 296.0 | 21.0 | 35.0 |
| 15 | 70.0 | 113.0 | 73.0 | 244.0 |
| 16 | 89.0 | 82.0 | 228.0 | 101.0 |
| 17 | 135.0 | 56.0 | 240.0 | 69.0 |
| 18 | 156.0 | 117.0 | 170.0 | 57.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.828 | -2.484 | 0.435 | -2.484 |
| 02 | -0.346 | -3.325 | 1.098 | -1.358 |
| 03 | -0.57 | -3.325 | 1.21 | -3.126 |
| 04 | -1.328 | -2.961 | -0.613 | 1.145 |
| 05 | -2.694 | 1.259 | -1.868 | -1.358 |
| 06 | 1.294 | -2.819 | -1.525 | -2.584 |
| 07 | -0.291 | 0.275 | 0.404 | -0.823 |
| 08 | 0.537 | 0.154 | -0.032 | -1.868 |
| 09 | 0.174 | -0.291 | 0.56 | -1.163 |
| 10 | -0.191 | -0.673 | -0.823 | 0.8 |
| 11 | -0.958 | -0.403 | 1.002 | -1.489 |
| 12 | 0.485 | -0.126 | -0.082 | -0.556 |
| 13 | -0.091 | 0.894 | -0.938 | -1.389 |
| 14 | 0.167 | 0.855 | -1.725 | -1.242 |
| 15 | -0.57 | -0.1 | -0.529 | 0.663 |
| 16 | -0.335 | -0.415 | 0.595 | -0.21 |
| 17 | 0.076 | -0.788 | 0.646 | -0.584 |
| 18 | 0.219 | -0.065 | 0.304 | -0.771 |