RELB_HUMAN.H11MO.0.C motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

RELB
(GeneCards)

Model

RELB_HUMAN.H11MO.0.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

12

Quality

C

Motif rank

0

Consensus

vRGGGMTTTSMh

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

28

TF family

NF-kappaB-related factors {6.1.1}

TF subfamily

NF-kappaB p65 subunit-like factors {6.1.1.2}

HGNC

EntrezGene

GeneID:5971
(SSTAR profile)

UniProt ID

UniProt AC

Q01201
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.20528
0.0005	5.93136
0.0001	7.41921

GTEx tissue expression atlas

RELB expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA1117.1 (RELB; Homo sapiens)

PCM

	A	C	G	T
01	7.651	4.196	13.081	3.085
02	3.949	2.098	20.979	0.987
03	1.974	0.987	25.051	0.0
04	4.936	0.0	23.077	0.0
05	9.996	0.0	18.017	0.0
06	12.587	12.217	0.0	3.209
07	1.111	0.0	2.962	23.94
08	0.987	0.0	3.949	23.077
09	0.987	3.579	0.0	23.447
10	3.949	18.017	4.936	1.111
11	6.047	19.991	1.974	0.0
12	9.132	10.736	3.085	5.06

PWM

	A	C	G	T
01	0.079	-0.444	0.574	-0.693
02	-0.494	-0.983	1.024	-1.46
03	-1.026	-1.46	1.195	-2.241
04	-0.306	-2.241	1.116	-2.241
05	0.323	-2.241	0.878	-2.241
06	0.538	0.51	-2.241	-0.662
07	-1.394	-2.241	-0.725	1.151
08	-1.46	-2.241	-0.494	1.116
09	-1.46	-0.574	-2.241	1.131
10	-0.494	0.878	-0.306	-1.394
11	-0.13	0.977	-1.026	-2.241
12	0.24	0.39	-0.693	-0.285