Model info
| Transcription factor | Rel | ||||||||
| Model | REL_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvhdGGGRAWKbMSW | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.921 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 11 | ||||||||
| Aligned words | 178 | ||||||||
| TF family | NF-kappaB-related factors {6.1.1} | ||||||||
| TF subfamily | NF-kappaB p65 subunit-like factors {6.1.1.2} | ||||||||
| MGI | MGI:97897 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | REL_MOUSE | ||||||||
| UniProt AC | P15307 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rel expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 55.0 | 15.0 | 46.0 | 62.0 |
| 02 | 49.0 | 30.0 | 86.0 | 13.0 |
| 03 | 75.0 | 25.0 | 21.0 | 57.0 |
| 04 | 86.0 | 7.0 | 54.0 | 31.0 |
| 05 | 25.0 | 1.0 | 145.0 | 7.0 |
| 06 | 2.0 | 0.0 | 175.0 | 1.0 |
| 07 | 15.0 | 0.0 | 161.0 | 2.0 |
| 08 | 110.0 | 3.0 | 62.0 | 3.0 |
| 09 | 163.0 | 1.0 | 11.0 | 3.0 |
| 10 | 125.0 | 5.0 | 17.0 | 31.0 |
| 11 | 15.0 | 24.0 | 29.0 | 110.0 |
| 12 | 2.0 | 38.0 | 59.0 | 79.0 |
| 13 | 35.0 | 122.0 | 8.0 | 13.0 |
| 14 | 18.0 | 135.0 | 20.0 | 5.0 |
| 15 | 118.0 | 20.0 | 18.0 | 22.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.206 | -1.033 | 0.032 | 0.324 |
| 02 | 0.094 | -0.381 | 0.645 | -1.164 |
| 03 | 0.51 | -0.555 | -0.72 | 0.241 |
| 04 | 0.645 | -1.708 | 0.189 | -0.349 |
| 05 | -0.555 | -2.993 | 1.161 | -1.708 |
| 06 | -2.632 | -3.565 | 1.348 | -2.993 |
| 07 | -1.033 | -3.565 | 1.265 | -2.632 |
| 08 | 0.888 | -2.367 | 0.324 | -2.367 |
| 09 | 1.277 | -2.993 | -1.315 | -2.367 |
| 10 | 1.014 | -1.984 | -0.918 | -0.349 |
| 11 | -1.033 | -0.594 | -0.413 | 0.888 |
| 12 | -2.632 | -0.153 | 0.275 | 0.562 |
| 13 | -0.232 | 0.99 | -1.595 | -1.164 |
| 14 | -0.864 | 1.091 | -0.766 | -1.984 |
| 15 | 0.957 | -0.766 | -0.864 | -0.676 |