We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRFX1
(GeneCards)
ModelRFX1_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
1
ConsensusbGTTGCCWdGR
Best auROC (human)0.574
Best auROC (mouse)0.994
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)7
Aligned words500
TF familyRFX-related factors {3.3.3}
TF subfamilyRFX1 (EF-C) {3.3.3.0.1}
HGNCHGNC:9982
EntrezGeneGeneID:5989
(SSTAR profile)
UniProt IDRFX1_HUMAN
UniProt ACP22670
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.886965
0.0005 4.97858
0.0001 7.21443
GTEx tissue expression atlas RFX1 expression
ReMap ChIP-seq dataset list RFX1 datasets
Motifs in JASPAR
MA0509.1 (Rfx1; Mus musculus)
PCM
ACGT
0150.0132.0161.0157.0
024.02.0494.00.0
030.06.03.0491.0
0413.038.02.0447.0
0537.08.0410.045.0
060.0472.01.027.0
070.0329.00.0171.0
08388.016.026.070.0
0998.013.0158.0231.0
1020.03.0475.02.0
1175.055.0347.023.0
PWM
ACGT
01-0.8980.0540.250.225
02-3.126-3.5731.365-4.4
03-4.4-2.819-3.3251.359
04-2.163-1.163-3.5731.265
05-1.189-2.5841.179-1.0
06-4.41.32-3.903-1.489
07-4.40.96-4.40.31
081.124-1.975-1.525-0.57
09-0.24-2.1630.2320.608
10-1.77-3.3251.326-3.573
11-0.503-0.8051.013-1.64