Model info
| Transcription factor | RFX1 (GeneCards) | ||||||||
| Model | RFX1_HUMAN.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | bGTTGCCWdGR | ||||||||
| Best auROC (human) | 0.574 | ||||||||
| Best auROC (mouse) | 0.994 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX1 (EF-C) {3.3.3.0.1} | ||||||||
| HGNC | HGNC:9982 | ||||||||
| EntrezGene | GeneID:5989 (SSTAR profile) | ||||||||
| UniProt ID | RFX1_HUMAN | ||||||||
| UniProt AC | P22670 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RFX1 expression | ||||||||
| ReMap ChIP-seq dataset list | RFX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 50.0 | 132.0 | 161.0 | 157.0 |
| 02 | 4.0 | 2.0 | 494.0 | 0.0 |
| 03 | 0.0 | 6.0 | 3.0 | 491.0 |
| 04 | 13.0 | 38.0 | 2.0 | 447.0 |
| 05 | 37.0 | 8.0 | 410.0 | 45.0 |
| 06 | 0.0 | 472.0 | 1.0 | 27.0 |
| 07 | 0.0 | 329.0 | 0.0 | 171.0 |
| 08 | 388.0 | 16.0 | 26.0 | 70.0 |
| 09 | 98.0 | 13.0 | 158.0 | 231.0 |
| 10 | 20.0 | 3.0 | 475.0 | 2.0 |
| 11 | 75.0 | 55.0 | 347.0 | 23.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.898 | 0.054 | 0.25 | 0.225 |
| 02 | -3.126 | -3.573 | 1.365 | -4.4 |
| 03 | -4.4 | -2.819 | -3.325 | 1.359 |
| 04 | -2.163 | -1.163 | -3.573 | 1.265 |
| 05 | -1.189 | -2.584 | 1.179 | -1.0 |
| 06 | -4.4 | 1.32 | -3.903 | -1.489 |
| 07 | -4.4 | 0.96 | -4.4 | 0.31 |
| 08 | 1.124 | -1.975 | -1.525 | -0.57 |
| 09 | -0.24 | -2.163 | 0.232 | 0.608 |
| 10 | -1.77 | -3.325 | 1.326 | -3.573 |
| 11 | -0.503 | -0.805 | 1.013 | -1.64 |