We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRfx1
ModelRFX1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length23
Quality
A
Motif rank
0
ConsensusbbbbSbGTTGCCWdGGvvMSvvb
Best auROC (human)0.699
Best auROC (mouse)0.994
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)7
Aligned words440
TF familyRFX-related factors {3.3.3}
TF subfamilyRFX1 (EF-C) {3.3.3.0.1}
MGIMGI:105982
EntrezGeneGeneID:19724
(SSTAR profile)
UniProt IDRFX1_MOUSE
UniProt ACP48377
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.4833100000000001
0.0005 3.8932599999999997
0.0001 9.03266
GTEx tissue expression atlas Rfx1 expression
Motifs in JASPAR
MA0509.1 (Rfx1; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
017.14312.59421.6553.32417.3256.39649.26639.13525.507100.14335.20916.6135.02215.19623.72212.37
021.82620.4429.8392.8869.33591.59247.38636.0168.75861.4943.35316.253.99732.41424.56210.468
031.9168.37711.5882.03418.05674.15268.90244.82611.97455.57860.50617.0832.76723.54329.5999.711
041.8419.6359.1044.1359.31488.88545.15318.2986.404112.15542.02210.0131.88837.11721.01613.633
051.0437.92910.4730.042.89374.15786.1254.6236.96961.20139.269.8664.8457.05930.2143.961
061.0261.0453.6840.04.1040.0146.2420.00.00.0166.0670.00.980.066.4720.999
070.00.00.06.1090.00.00.01.041.95616.42.044412.0650.00.00.00.999
080.01.0460.00.9091.0615.6430.09.6951.0161.0280.00.05.91774.8041.885337.606
093.10.04.8950.01.8951.04464.76914.8140.00.00.9260.95913.8174.223310.77319.399
100.018.8110.00.00.05.2670.00.00.0345.1612.87133.3310.035.1720.00.0
110.00.00.00.00.0316.1951.76886.4481.0581.8130.00.00.029.3510.03.98
120.00.01.0580.0248.18826.89425.52746.750.9010.00.8670.075.2581.79112.2241.155
1345.39115.20989.111174.6362.7174.31110.83410.8233.744.99719.03911.915.9362.1716.47313.325
141.9640.065.820.03.9550.022.7320.02.9680.872131.6180.012.2770.0198.4060.0
150.00.021.1640.00.00.00.8720.050.22221.939340.5655.8510.00.00.00.0
160.93525.05922.1972.03112.1141.985.8871.95768.42162.3968.41463.3761.9420.8623.0470.0
1727.7733.76250.8261.05179.72415.50974.96720.09258.02222.07715.3644.08220.4294.6626.49715.778
1887.18448.40944.7985.55719.8885.79717.4532.87131.06825.2439.4411.90222.0175.0616.8667.059
1915.576221.3768.00715.1989.07140.12522.75812.5565.25451.5914.8936.824.0669.3712.0211.93
204.93918.0979.0971.83463.80297.085136.32925.2463.83410.86130.7022.2822.2651.9328.5793.73
2118.07212.09441.363.31328.99826.02259.3213.63326.61869.719100.647.7314.3317.43820.380.943
2211.56420.25932.97813.21819.73527.69139.78728.0620.17690.35978.13133.0354.7219.0077.9343.958
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.311-0.766-0.237-2.02-0.4560.710.5760.347-0.0761.2810.243-0.496-1.643-0.584-0.147-0.784
02-2.538-0.2930.079-2.146-1.0561.1920.5370.265-1.1170.7960.449-0.518-1.8530.161-0.113-0.945
03-2.498-1.159-0.847-2.448-0.4150.9820.9090.482-0.8150.6950.78-0.469-2.183-0.1540.071-1.018
04-2.532-0.333-1.08-1.822-1.0581.1620.489-0.402-1.4151.3940.418-0.988-2.510.295-0.266-0.689
05-2.976-1.212-0.945-4.2960.4380.9821.1310.678-1.3350.7910.351-1.002-1.676-1.3230.092-1.861
06-2.988-2.9790.661-4.296-1.829-4.2961.659-4.296-4.296-4.2961.785-4.296-3.022-4.2960.873-3.008
07-4.296-4.296-4.296-1.459-4.296-4.296-4.296-2.979-2.481-0.509-2.4442.693-4.296-4.296-4.296-3.008
08-4.296-2.974-4.296-3.075-2.963-1.534-4.296-1.019-2.995-2.987-4.296-4.296-1.4890.991-2.5112.494
09-2.082-4.296-1.666-4.296-2.507-2.9760.847-0.608-4.296-4.296-3.062-3.037-0.676-1.8032.411-0.345
10-4.296-0.375-4.296-4.296-4.296-1.598-4.296-4.296-4.2962.516-2.150.189-4.2960.242-4.296-4.296
11-4.296-4.296-4.296-4.296-4.2962.428-2.5641.135-2.966-2.544-4.296-4.296-4.2960.063-4.296-1.857
12-4.296-4.296-2.966-4.2962.186-0.023-0.0750.524-3.081-4.296-3.108-4.2960.997-2.554-0.795-2.9
130.494-0.5831.1651.836-2.199-1.784-0.912-0.913-1.913-1.647-0.363-0.821-0.537-2.393-0.505-0.711
14-2.477-4.2960.863-4.296-1.862-4.296-0.189-4.296-2.121-3.1051.553-4.296-0.791-4.2961.963-4.296
15-4.296-4.296-0.259-4.296-4.296-4.296-3.105-4.2960.595-0.2242.502-1.5-4.296-4.296-4.296-4.296
16-3.055-0.093-0.212-2.449-0.804-2.47-1.494-2.480.9021.7630.9020.826-2.487-3.112-2.097-4.296
170.008-1.9080.607-2.9711.054-0.5640.993-0.310.738-0.218-0.573-1.834-0.294-1.712-0.038-0.547
181.1430.5580.481-1.548-0.32-1.508-0.448-2.1511.549-0.086-1.045-2.504-0.22-1.635-1.349-1.322
19-0.5592.072-1.203-0.583-1.0830.372-0.188-0.769-1.60.621-0.603-1.355-1.837-1.052-2.453-2.492
20-1.658-0.413-1.08-2.5340.8321.251.589-0.086-1.891-0.910.107-2.35-2.357-2.4920.037-1.916
21-0.414-0.8060.402-2.0230.051-0.0560.76-0.689-0.0330.9211.286-1.236-1.779-1.273-0.296-3.049
22-0.849-0.3020.178-0.719-0.3280.0050.3640.019-0.3061.1791.0340.18-1.7-1.09-1.211-1.862