Model info
| Transcription factor | RFX2 (GeneCards) | ||||||||
| Model | RFX2_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 18 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | YbGTTGCCWWGGvRACvv | ||||||||
| Best auROC (human) | 0.976 | ||||||||
| Best auROC (mouse) | 0.991 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 426 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX2 {3.3.3.0.2} | ||||||||
| HGNC | HGNC:9983 | ||||||||
| EntrezGene | GeneID:5990 (SSTAR profile) | ||||||||
| UniProt ID | RFX2_HUMAN | ||||||||
| UniProt AC | P48378 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RFX2 expression | ||||||||
| ReMap ChIP-seq dataset list | RFX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 18.0 | 241.0 | 44.0 | 120.0 |
| 02 | 55.0 | 75.0 | 173.0 | 120.0 |
| 03 | 0.0 | 0.0 | 423.0 | 0.0 |
| 04 | 0.0 | 3.0 | 0.0 | 420.0 |
| 05 | 8.0 | 34.0 | 2.0 | 379.0 |
| 06 | 18.0 | 1.0 | 398.0 | 6.0 |
| 07 | 1.0 | 383.0 | 1.0 | 38.0 |
| 08 | 0.0 | 339.0 | 0.0 | 84.0 |
| 09 | 340.0 | 23.0 | 24.0 | 36.0 |
| 10 | 55.0 | 3.0 | 49.0 | 316.0 |
| 11 | 33.0 | 0.0 | 388.0 | 2.0 |
| 12 | 49.0 | 3.0 | 370.0 | 1.0 |
| 13 | 66.0 | 226.0 | 82.0 | 49.0 |
| 14 | 244.0 | 15.0 | 127.0 | 37.0 |
| 15 | 358.0 | 23.0 | 31.0 | 11.0 |
| 16 | 10.0 | 363.0 | 7.0 | 43.0 |
| 17 | 130.0 | 109.0 | 140.0 | 44.0 |
| 18 | 81.0 | 112.0 | 188.0 | 42.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.704 | 0.816 | -0.857 | 0.125 |
| 02 | -0.641 | -0.338 | 0.487 | 0.125 |
| 03 | -4.262 | -4.262 | 1.376 | -4.262 |
| 04 | -4.262 | -3.169 | -4.262 | 1.369 |
| 05 | -2.423 | -1.105 | -3.419 | 1.266 |
| 06 | -1.704 | -3.754 | 1.315 | -2.659 |
| 07 | -3.754 | 1.277 | -3.754 | -0.999 |
| 08 | -4.262 | 1.155 | -4.262 | -0.227 |
| 09 | 1.158 | -1.476 | -1.436 | -1.051 |
| 10 | -0.641 | -3.169 | -0.753 | 1.085 |
| 11 | -1.134 | -4.262 | 1.29 | -3.419 |
| 12 | -0.753 | -3.169 | 1.242 | -3.754 |
| 13 | -0.463 | 0.752 | -0.25 | -0.753 |
| 14 | 0.828 | -1.871 | 0.181 | -1.024 |
| 15 | 1.209 | -1.476 | -1.194 | -2.149 |
| 16 | -2.232 | 1.223 | -2.534 | -0.88 |
| 17 | 0.204 | 0.03 | 0.277 | -0.857 |
| 18 | -0.262 | 0.057 | 0.569 | -0.902 |