We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRFX2
(GeneCards)
ModelRFX2_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
1
ConsensusYbGTTGCCWKGG
Best auROC (human)0.965
Best auROC (mouse)0.996
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)7
Aligned words501
TF familyRFX-related factors {3.3.3}
TF subfamilyRFX2 {3.3.3.0.2}
HGNCHGNC:9983
EntrezGeneGeneID:5990
(SSTAR profile)
UniProt IDRFX2_HUMAN
UniProt ACP48378
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.983525
0.0005 4.19496
0.0001 6.732415
GTEx tissue expression atlas RFX2 expression
ReMap ChIP-seq dataset list RFX2 datasets
Motifs in JASPAR
MA0600.1 (RFX2; Homo sapiens)
MA0600.2 (RFX2; Homo sapiens)
PCM
ACGT
0120.0281.079.0120.0
0238.0106.0188.0168.0
032.00.0497.01.0
040.01.00.0499.0
0510.019.03.0468.0
0617.06.0460.017.0
071.0466.01.032.0
081.0375.00.0124.0
09395.030.022.053.0
1062.019.092.0327.0
1135.02.0462.01.0
1275.019.0404.02.0
PWM
ACGT
01-1.770.803-0.452-0.04
02-1.163-0.1630.4040.293
03-3.573-4.41.371-3.903
04-4.4-3.903-4.41.375
05-2.394-1.818-3.3251.311
06-1.92-2.8191.294-1.92
07-3.9031.307-3.903-1.328
08-3.9031.09-4.4-0.008
091.142-1.389-1.681-0.841
10-0.689-1.818-0.3020.954
11-1.242-3.5731.298-3.903
12-0.503-1.8181.165-3.573