Transcription factor | RFX2 (GeneCards) | ||||||||
Model | RFX2_HUMAN.H11MO.1.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 12 | ||||||||
Quality | A | ||||||||
Motif rank | 1 | ||||||||
Consensus | YbGTTGCCWKGG | ||||||||
Best auROC (human) | 0.965 | ||||||||
Best auROC (mouse) | 0.996 | ||||||||
Peak sets in benchmark (human) | 7 | ||||||||
Peak sets in benchmark (mouse) | 7 | ||||||||
Aligned words | 501 | ||||||||
TF family | RFX-related factors {3.3.3} | ||||||||
TF subfamily | RFX2 {3.3.3.0.2} | ||||||||
HGNC | HGNC:9983 | ||||||||
EntrezGene | GeneID:5990 (SSTAR profile) | ||||||||
UniProt ID | RFX2_HUMAN | ||||||||
UniProt AC | P48378 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | RFX2 expression | ||||||||
ReMap ChIP-seq dataset list | RFX2 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 20.0 | 281.0 | 79.0 | 120.0 |
02 | 38.0 | 106.0 | 188.0 | 168.0 |
03 | 2.0 | 0.0 | 497.0 | 1.0 |
04 | 0.0 | 1.0 | 0.0 | 499.0 |
05 | 10.0 | 19.0 | 3.0 | 468.0 |
06 | 17.0 | 6.0 | 460.0 | 17.0 |
07 | 1.0 | 466.0 | 1.0 | 32.0 |
08 | 1.0 | 375.0 | 0.0 | 124.0 |
09 | 395.0 | 30.0 | 22.0 | 53.0 |
10 | 62.0 | 19.0 | 92.0 | 327.0 |
11 | 35.0 | 2.0 | 462.0 | 1.0 |
12 | 75.0 | 19.0 | 404.0 | 2.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.77 | 0.803 | -0.452 | -0.04 |
02 | -1.163 | -0.163 | 0.404 | 0.293 |
03 | -3.573 | -4.4 | 1.371 | -3.903 |
04 | -4.4 | -3.903 | -4.4 | 1.375 |
05 | -2.394 | -1.818 | -3.325 | 1.311 |
06 | -1.92 | -2.819 | 1.294 | -1.92 |
07 | -3.903 | 1.307 | -3.903 | -1.328 |
08 | -3.903 | 1.09 | -4.4 | -0.008 |
09 | 1.142 | -1.389 | -1.681 | -0.841 |
10 | -0.689 | -1.818 | -0.302 | 0.954 |
11 | -1.242 | -3.573 | 1.298 | -3.903 |
12 | -0.503 | -1.818 | 1.165 | -3.573 |