We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRfx2
ModelRFX2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusbbbGTTGCCWKGGhRACvvv
Best auROC (human)0.978
Best auROC (mouse)0.998
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)7
Aligned words360
TF familyRFX-related factors {3.3.3}
TF subfamilyRFX2 {3.3.3.0.2}
MGIMGI:106583
EntrezGeneGeneID:19725
(SSTAR profile)
UniProt IDRFX2_MOUSE
UniProt ACP48379
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.90556
0.0005 3.4619099999999996
0.0001 8.948910000000001
GTEx tissue expression atlas Rfx2 expression
Motifs in JASPAR
MA0600.1 (RFX2; Homo sapiens)
MA0600.2 (RFX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
012.019.011.011.04.064.027.042.012.067.029.023.04.022.014.09.0
020.07.012.03.024.051.065.032.04.050.019.08.07.012.060.06.0
030.00.034.01.00.00.0120.00.02.00.0154.00.02.00.047.00.0
040.00.00.04.00.00.00.00.01.07.01.0346.00.00.00.01.0
050.00.00.01.00.00.00.07.00.00.00.01.09.019.00.0323.0
064.00.04.01.03.00.016.00.00.00.00.00.034.01.0274.023.0
070.041.00.00.00.01.00.00.01.0267.00.026.00.024.00.00.0
080.00.00.01.00.0250.00.083.00.00.00.00.00.018.00.08.0
090.00.00.00.0202.017.020.029.00.00.00.00.079.01.09.03.0
1032.016.040.0193.04.06.06.02.03.03.013.010.012.01.05.014.0
110.00.051.00.02.00.024.00.02.01.061.00.015.00.0204.00.0
121.00.018.00.00.00.01.00.025.08.0307.00.00.00.00.00.0
131.019.05.01.02.04.02.00.0100.0139.035.052.00.00.00.00.0
1426.05.070.02.065.01.089.07.030.00.09.03.022.02.022.07.0
15103.016.021.03.05.00.03.00.0169.014.03.04.010.05.03.01.0
164.0262.04.017.01.028.03.03.00.028.01.01.01.02.01.04.0
171.05.00.00.079.086.0119.036.02.03.04.00.02.07.013.03.0
1815.011.054.04.027.014.053.07.021.044.066.05.03.09.026.01.0
198.025.030.03.011.021.025.021.035.068.071.025.01.03.010.03.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-2.268-0.166-0.699-0.699-1.6551.0350.180.617-0.6151.080.250.022-1.655-0.022-0.465-0.892
02-4.13-1.133-0.615-1.9150.0640.8091.050.347-1.6550.79-0.166-1.005-1.133-0.6150.971-1.278
03-4.13-4.130.407-2.816-4.13-4.131.661-4.13-2.268-4.131.91-4.13-2.268-4.130.728-4.13
04-4.13-4.13-4.13-1.655-4.13-4.13-4.13-4.13-2.816-1.133-2.8162.718-4.13-4.13-4.13-2.816
05-4.13-4.13-4.13-2.816-4.13-4.13-4.13-1.133-4.13-4.13-4.13-2.816-0.892-0.166-4.132.649
06-1.655-4.13-1.655-2.816-1.915-4.13-0.334-4.13-4.13-4.13-4.13-4.130.407-2.8162.4850.022
07-4.130.593-4.13-4.13-4.13-2.816-4.13-4.13-2.8162.459-4.130.142-4.130.064-4.13-4.13
08-4.13-4.13-4.13-2.816-4.132.393-4.131.294-4.13-4.13-4.13-4.13-4.13-0.219-4.13-1.005
09-4.13-4.13-4.13-4.132.18-0.275-0.1160.25-4.13-4.13-4.13-4.131.244-2.816-0.892-1.915
100.347-0.3340.5682.135-1.655-1.278-1.278-2.268-1.915-1.915-0.537-0.791-0.615-2.816-1.449-0.465
11-4.13-4.130.809-4.13-2.268-4.130.064-4.13-2.268-2.8160.987-4.13-0.397-4.132.19-4.13
12-2.816-4.13-0.219-4.13-4.13-4.13-2.816-4.130.104-1.0052.598-4.13-4.13-4.13-4.13-4.13
13-2.816-0.166-1.449-2.816-2.268-1.655-2.268-4.131.4791.8070.4360.829-4.13-4.13-4.13-4.13
140.142-1.4491.124-2.2681.05-2.8161.363-1.1330.284-4.13-0.892-1.915-0.022-2.268-0.022-1.133
151.509-0.334-0.068-1.915-1.449-4.13-1.915-4.132.002-0.465-1.915-1.655-0.791-1.449-1.915-2.816
16-1.6552.44-1.655-0.275-2.8160.216-1.915-1.915-4.130.216-2.816-2.816-2.816-2.268-2.816-1.655
17-2.816-1.449-4.13-4.131.2441.3291.6520.464-2.268-1.915-1.655-4.13-2.268-1.133-0.537-1.915
18-0.397-0.6990.866-1.6550.18-0.4650.847-1.133-0.0680.6631.065-1.449-1.915-0.8920.142-2.816
19-1.0050.1040.284-1.915-0.699-0.0680.104-0.0680.4361.0951.1380.104-2.816-1.915-0.791-1.915