Model info
| Transcription factor | Rfx2 | ||||||||
| Model | RFX2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 22 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vbSnGTYRYYdKGGvRMYvdvn | ||||||||
| Best auROC (human) | 0.937 | ||||||||
| Best auROC (mouse) | 0.997 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 132 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX2 {3.3.3.0.2} | ||||||||
| MGI | MGI:106583 | ||||||||
| EntrezGene | GeneID:19725 (SSTAR profile) | ||||||||
| UniProt ID | RFX2_MOUSE | ||||||||
| UniProt AC | P48379 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rfx2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 17.0 | 44.0 | 63.0 | 8.0 |
| 02 | 12.0 | 34.0 | 70.0 | 16.0 |
| 03 | 6.0 | 76.0 | 42.0 | 8.0 |
| 04 | 23.0 | 24.0 | 43.0 | 42.0 |
| 05 | 10.0 | 1.0 | 118.0 | 3.0 |
| 06 | 1.0 | 7.0 | 0.0 | 124.0 |
| 07 | 8.0 | 26.0 | 3.0 | 95.0 |
| 08 | 14.0 | 5.0 | 100.0 | 13.0 |
| 09 | 5.0 | 102.0 | 4.0 | 21.0 |
| 10 | 3.0 | 97.0 | 5.0 | 27.0 |
| 11 | 95.0 | 3.0 | 17.0 | 17.0 |
| 12 | 13.0 | 6.0 | 30.0 | 83.0 |
| 13 | 15.0 | 2.0 | 114.0 | 1.0 |
| 14 | 15.0 | 7.0 | 109.0 | 1.0 |
| 15 | 41.0 | 53.0 | 20.0 | 18.0 |
| 16 | 72.0 | 3.0 | 44.0 | 13.0 |
| 17 | 96.0 | 19.0 | 13.0 | 4.0 |
| 18 | 8.0 | 92.0 | 10.0 | 22.0 |
| 19 | 21.0 | 44.0 | 62.0 | 5.0 |
| 20 | 49.0 | 13.0 | 55.0 | 15.0 |
| 21 | 23.0 | 22.0 | 71.0 | 16.0 |
| 22 | 45.0 | 20.0 | 34.0 | 33.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.63 | 0.279 | 0.629 | -1.311 |
| 02 | -0.951 | 0.029 | 0.733 | -0.687 |
| 03 | -1.556 | 0.814 | 0.233 | -1.311 |
| 04 | -0.346 | -0.305 | 0.256 | 0.233 |
| 05 | -1.115 | -2.735 | 1.248 | -2.093 |
| 06 | -2.735 | -1.426 | -3.333 | 1.297 |
| 07 | -1.311 | -0.229 | -2.093 | 1.034 |
| 08 | -0.81 | -1.705 | 1.084 | -0.878 |
| 09 | -1.705 | 1.104 | -1.88 | -0.432 |
| 10 | -2.093 | 1.054 | -1.705 | -0.193 |
| 11 | 1.034 | -2.093 | -0.63 | -0.63 |
| 12 | -0.878 | -1.556 | -0.092 | 0.901 |
| 13 | -0.747 | -2.363 | 1.214 | -2.735 |
| 14 | -0.747 | -1.426 | 1.17 | -2.735 |
| 15 | 0.21 | 0.46 | -0.478 | -0.577 |
| 16 | 0.761 | -2.093 | 0.279 | -0.878 |
| 17 | 1.044 | -0.526 | -0.878 | -1.88 |
| 18 | -1.311 | 1.002 | -1.115 | -0.388 |
| 19 | -0.432 | 0.279 | 0.614 | -1.705 |
| 20 | 0.384 | -0.878 | 0.496 | -0.747 |
| 21 | -0.346 | -0.388 | 0.747 | -0.687 |
| 22 | 0.301 | -0.478 | 0.029 | 0.0 |