Transcription factor | Rfx2 | ||||||||
Model | RFX2_MOUSE.H11MO.1.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | A | ||||||||
Motif rank | 1 | ||||||||
Consensus | bGTTGCCWdGG | ||||||||
Best auROC (human) | 0.96 | ||||||||
Best auROC (mouse) | 0.997 | ||||||||
Peak sets in benchmark (human) | 7 | ||||||||
Peak sets in benchmark (mouse) | 7 | ||||||||
Aligned words | 500 | ||||||||
TF family | RFX-related factors {3.3.3} | ||||||||
TF subfamily | RFX2 {3.3.3.0.2} | ||||||||
MGI | MGI:106583 | ||||||||
EntrezGene | GeneID:19725 (SSTAR profile) | ||||||||
UniProt ID | RFX2_MOUSE | ||||||||
UniProt AC | P48379 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Rfx2 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 44.0 | 180.0 | 213.0 | 63.0 |
02 | 4.0 | 0.0 | 495.0 | 1.0 |
03 | 1.0 | 4.0 | 1.0 | 494.0 |
04 | 5.0 | 39.0 | 4.0 | 452.0 |
05 | 58.0 | 1.0 | 404.0 | 37.0 |
06 | 1.0 | 461.0 | 0.0 | 38.0 |
07 | 0.0 | 365.0 | 1.0 | 134.0 |
08 | 384.0 | 19.0 | 43.0 | 54.0 |
09 | 77.0 | 28.0 | 130.0 | 265.0 |
10 | 26.0 | 2.0 | 465.0 | 7.0 |
11 | 60.0 | 42.0 | 394.0 | 4.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.022 | 0.361 | 0.528 | -0.673 |
02 | -3.126 | -4.4 | 1.367 | -3.903 |
03 | -3.903 | -3.126 | -3.903 | 1.365 |
04 | -2.961 | -1.138 | -3.126 | 1.276 |
05 | -0.754 | -3.903 | 1.165 | -1.189 |
06 | -3.903 | 1.296 | -4.4 | -1.163 |
07 | -4.4 | 1.063 | -3.903 | 0.069 |
08 | 1.114 | -1.818 | -1.044 | -0.823 |
09 | -0.477 | -1.454 | 0.039 | 0.745 |
10 | -1.525 | -3.573 | 1.305 | -2.694 |
11 | -0.721 | -1.067 | 1.14 | -3.126 |