Model info
| Transcription factor | Rfx3 | ||||||||
| Model | RFX3_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 16 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | SbGTTGCCWKGGvRAC | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.989 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 351 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX3 {3.3.3.0.3} | ||||||||
| MGI | MGI:106582 | ||||||||
| EntrezGene | GeneID:19726 (SSTAR profile) | ||||||||
| UniProt ID | RFX3_MOUSE | ||||||||
| UniProt AC | P48381 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rfx3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 9.0 | 203.0 | 77.0 | 61.0 |
| 02 | 16.0 | 97.0 | 170.0 | 67.0 |
| 03 | 0.0 | 0.0 | 350.0 | 0.0 |
| 04 | 0.0 | 13.0 | 1.0 | 336.0 |
| 05 | 6.0 | 24.0 | 1.0 | 319.0 |
| 06 | 16.0 | 5.0 | 310.0 | 19.0 |
| 07 | 0.0 | 322.0 | 1.0 | 27.0 |
| 08 | 0.0 | 293.0 | 0.0 | 57.0 |
| 09 | 273.0 | 9.0 | 23.0 | 45.0 |
| 10 | 44.0 | 7.0 | 51.0 | 248.0 |
| 11 | 20.0 | 0.0 | 330.0 | 0.0 |
| 12 | 33.0 | 2.0 | 315.0 | 0.0 |
| 13 | 79.0 | 147.0 | 63.0 | 61.0 |
| 14 | 177.0 | 12.0 | 150.0 | 11.0 |
| 15 | 294.0 | 27.0 | 24.0 | 5.0 |
| 16 | 10.0 | 299.0 | 5.0 | 36.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.14 | 0.832 | -0.126 | -0.354 |
| 02 | -1.628 | 0.101 | 0.656 | -0.262 |
| 03 | -4.107 | -4.107 | 1.374 | -4.107 |
| 04 | -4.107 | -1.817 | -3.586 | 1.333 |
| 05 | -2.478 | -1.251 | -3.586 | 1.282 |
| 06 | -1.628 | -2.622 | 1.253 | -1.47 |
| 07 | -4.107 | 1.291 | -3.586 | -1.14 |
| 08 | -4.107 | 1.197 | -4.107 | -0.42 |
| 09 | 1.127 | -2.14 | -1.291 | -0.65 |
| 10 | -0.671 | -2.352 | -0.528 | 1.031 |
| 11 | -1.422 | -4.107 | 1.315 | -4.107 |
| 12 | -0.948 | -3.246 | 1.269 | -4.107 |
| 13 | -0.1 | 0.512 | -0.322 | -0.354 |
| 14 | 0.696 | -1.888 | 0.532 | -1.965 |
| 15 | 1.2 | -1.14 | -1.251 | -2.622 |
| 16 | -2.049 | 1.217 | -2.622 | -0.865 |