Model info
| Transcription factor | Rfx3 | ||||||||
| Model | RFX3_MOUSE.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | bGTTGCCWKG | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.997 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX3 {3.3.3.0.3} | ||||||||
| MGI | MGI:106582 | ||||||||
| EntrezGene | GeneID:19726 (SSTAR profile) | ||||||||
| UniProt ID | RFX3_MOUSE | ||||||||
| UniProt AC | P48381 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rfx3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 38.0 | 153.0 | 200.0 | 109.0 |
| 02 | 3.0 | 4.0 | 492.0 | 1.0 |
| 03 | 0.0 | 6.0 | 0.0 | 494.0 |
| 04 | 3.0 | 33.0 | 0.0 | 464.0 |
| 05 | 20.0 | 8.0 | 448.0 | 24.0 |
| 06 | 0.0 | 483.0 | 0.0 | 17.0 |
| 07 | 0.0 | 375.0 | 0.0 | 125.0 |
| 08 | 390.0 | 24.0 | 26.0 | 60.0 |
| 09 | 76.0 | 10.0 | 130.0 | 284.0 |
| 10 | 22.0 | 2.0 | 475.0 | 1.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.163 | 0.2 | 0.465 | -0.135 |
| 02 | -3.325 | -3.126 | 1.361 | -3.903 |
| 03 | -4.4 | -2.819 | -4.4 | 1.365 |
| 04 | -3.325 | -1.298 | -4.4 | 1.303 |
| 05 | -1.77 | -2.584 | 1.268 | -1.6 |
| 06 | -4.4 | 1.343 | -4.4 | -1.92 |
| 07 | -4.4 | 1.09 | -4.4 | 0.0 |
| 08 | 1.129 | -1.6 | -1.525 | -0.721 |
| 09 | -0.49 | -2.394 | 0.039 | 0.814 |
| 10 | -1.681 | -3.573 | 1.326 | -3.903 |