We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRFX4
(GeneCards)
ModelRFX4_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length15
Quality
D
Motif rank
0
ConsensusbGTTGCCATGGhWAY
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words2791
TF familyRFX-related factors {3.3.3}
TF subfamilyRFX4 {3.3.3.0.4}
HGNCHGNC:9985
EntrezGeneGeneID:5992
(SSTAR profile)
UniProt IDRFX4_HUMAN
UniProt ACQ33E94
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.69906
0.0005 3.8896100000000002
0.0001 6.37426
GTEx tissue expression atlas RFX4 expression
ReMap ChIP-seq dataset list RFX4 datasets
Motifs in JASPAR
PCM
ACGT
01316.751009.75954.75494.75
0286.2564.252559.2566.25
0312.7530.7521.752710.75
04180.75113.7517.752463.75
05279.522.52336.5137.5
061.02112.028.0635.0
070.02250.02.0524.0
082443.056.0129.0148.0
09140.048.0216.02372.0
10222.024.02528.02.0
11266.592.52382.534.5
12434.5792.5114.51434.5
131327.2560.25437.25951.25
142365.25193.2599.25118.25
15258.01846.0235.0437.0
PWM
ACGT
01-0.7810.3740.318-0.337
02-2.065-2.3521.303-2.322
03-3.855-3.057-3.3781.36
04-1.337-1.794-3.5631.265
05-0.905-3.3471.212-1.607
06-5.4531.111-3.145-0.089
07-5.8611.174-5.163-0.28
081.256-2.485-1.67-1.535
09-1.59-2.634-1.1611.227
10-1.134-3.2881.291-5.163
11-0.953-1.9971.231-2.948
12-0.4670.132-1.7880.725
130.647-2.414-0.460.315
141.224-1.271-1.928-1.756
15-0.9850.977-1.077-0.461