We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRFX5
(GeneCards)
ModelRFX5_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length23
Quality
A
Motif rank
0
ConsensusnvnvbSvbYdGTYRCYRRGbvvv
Best auROC (human)0.987
Best auROC (mouse)
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)
Aligned words500
TF familyRFX-related factors {3.3.3}
TF subfamilyRFX5 {3.3.3.0.5}
HGNCHGNC:9986
EntrezGeneGeneID:5993
(SSTAR profile)
UniProt IDRFX5_HUMAN
UniProt ACP48382
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.54091
0.0005 8.502310000000001
0.0001 12.656860000000002
GTEx tissue expression atlas RFX5 expression
ReMap ChIP-seq dataset list RFX5 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0118.41415.66146.89211.61921.94417.29735.79433.51960.18529.21245.29819.3312.00524.53490.917.395
0213.42359.93819.05320.13518.92326.14916.45225.1874.00768.69443.90632.27711.86728.38720.69720.912
0311.17445.86650.50710.67353.19622.72691.62715.61915.58339.64439.835.055.83513.16171.3558.154
042.02410.36122.75150.65217.85922.28944.30436.94613.34825.05641.003173.9131.9328.63714.81214.115
055.58216.7669.9852.82913.81423.74115.55113.23619.28243.25428.47931.85517.777227.80721.6068.436
0618.613.19723.74410.904221.433.26330.18926.7158.79431.32319.98615.5193.49828.54515.5368.776
077.1691.39457.00196.74726.31426.52125.24318.258.03132.59437.07311.7575.6617.29530.7568.205
083.87732.0654.6156.60818.99783.16622.58243.05810.466101.3620.87817.373.4982.54221.92327.004
097.3065.52612.86211.13685.87523.98232.019157.25824.1239.85516.49419.52619.5741.6934.02838.748
104.6910.0132.1860.02.3430.77737.9320.00.01.3593.270.7827.0920.756217.4061.413
110.00.00.96813.1580.00.7770.02.1061.89324.67820.205434.0190.00.00.02.195
120.00.7721.1210.00.01.6465.91517.8938.7160.8581.739.8742.65870.817.484330.525
1310.6093.37224.5412.85330.820.77418.81923.6740.00.012.5483.70346.3514.319278.76918.851
140.086.7920.9880.01.98315.4061.0760.05.191294.29118.47916.7160.89855.5821.6360.964
150.04.5441.7241.8037.747212.1138.216223.9941.74813.882.1654.3851.4989.7870.06.394
163.7770.7674.7191.729191.314.46233.06711.4867.2410.04.8650.0131.9894.61595.9364.037
1758.08118.826182.06475.3467.0442.0180.7820.019.6013.878108.6016.5073.3242.6249.2642.04
180.8863.79877.6555.7128.9866.0568.7673.5373.47312.932279.3274.9796.2731.99573.5432.081
193.5395.6035.9974.486.223.0253.50512.03254.976179.187146.85858.272.37112.1330.9350.87
2024.70212.12125.5664.717122.28516.83940.73720.08757.75742.56634.50522.46629.349.97432.2724.066
2155.3948.888165.5684.23532.45317.97515.83315.23943.12523.71551.90914.3315.12210.50327.6188.092
2271.55418.22434.03512.28212.31816.08415.34617.334130.07845.49567.21718.1387.6169.07512.04313.163
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.52-0.6790.402-0.969-0.348-0.5820.1340.0690.649-0.0670.367-0.473-0.937-0.2391.06-0.576
02-0.8290.645-0.487-0.433-0.494-0.176-0.631-0.2130.8550.7810.3360.032-0.948-0.095-0.406-0.396
03-1.0070.380.475-1.0510.527-0.3141.068-0.681-0.6840.2350.24-1.761-1.626-0.8480.819-1.309
04-2.574-1.079-0.3130.478-0.55-0.3330.3450.166-0.834-0.2180.2691.706-2.613-1.254-0.733-0.78
05-1.668-0.612-1.115-2.286-0.801-0.271-0.686-0.842-0.4750.322-0.0920.019-0.5551.976-0.364-1.277
06-0.51-2.178-0.271-1.031.9470.062-0.034-0.155-1.2370.002-0.44-0.688-2.097-0.089-0.687-1.239
07-1.4331.0650.5951.122-0.17-0.162-0.211-0.529-1.3240.0420.169-0.957-1.655-0.582-0.016-1.303
08-2.0040.025-1.844-1.509-0.490.971-0.320.317-1.071.168-0.397-0.578-2.0990.964-0.349-0.144
09-1.414-1.677-0.87-1.011.003-0.2610.0241.606-0.255-1.128-0.628-0.463-0.461-2.7230.0840.213
10-1.829-4.41.433-4.4-2.45-3.3010.192-4.4-4.4-2.9011.085-3.297-1.442-3.3191.929-2.866
11-4.4-4.4-3.149-0.848-4.4-3.301-4.4-2.54-2.63-0.233-0.4292.62-4.4-4.4-4.4-2.505
12-4.4-3.305-3.043-4.4-4.4-2.744-1.613-0.548-1.246-3.234-2.704-1.1260.3080.811-1.3912.347
13-1.057-2.13-0.238-0.871-0.014-3.304-0.499-0.274-4.4-4.4-0.894-2.0460.39-0.7662.177-0.497
14-4.41.014-3.135-4.4-2.591-0.695-3.073-4.4-1.7352.232-0.517-0.615-3.2020.57-2.749-3.153
15-4.4-1.858-2.706-2.67-1.3581.905-1.3021.959-2.695-0.796-2.517-1.891-2.82-1.134-4.4-1.54
16-2.028-3.31-1.824-2.7041.802-1.8750.056-0.98-1.422-4.4-1.796-4.41.431-1.8441.113-1.967
170.614-0.4991.7520.873-1.448-2.576-3.297-4.4-0.459-2.0041.237-1.523-2.143-2.352-1.187-2.567
18-3.212-2.0220.903-1.646-1.216-1.591-1.24-2.087-2.103-0.8652.179-1.774-1.558-2.5860.849-2.55
19-2.086-1.664-1.6-1.872-1.566-2.227-2.095-0.9350.561.7361.5380.617-2.439-0.927-3.174-3.225
20-0.232-0.928-0.198-1.8241.355-0.6080.262-0.4350.6090.3060.098-0.325-0.062-1.1160.032-1.961
210.567-1.2271.657-1.9230.037-0.544-0.668-0.7050.319-0.2720.503-0.765-1.748-1.066-0.122-1.317
220.821-0.5310.084-0.915-0.912-0.653-0.699-0.581.4170.3720.759-0.535-1.374-1.207-0.934-0.848