Model info
| Transcription factor | RFX5 (GeneCards) | ||||||||
| Model | RFX5_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vbbvbbdGTYRCYRKGbvvv | ||||||||
| Best auROC (human) | 0.973 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 14 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX5 {3.3.3.0.5} | ||||||||
| HGNC | HGNC:9986 | ||||||||
| EntrezGene | GeneID:5993 (SSTAR profile) | ||||||||
| UniProt ID | RFX5_HUMAN | ||||||||
| UniProt AC | P48382 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RFX5 expression | ||||||||
| ReMap ChIP-seq dataset list | RFX5 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 95.0 | 109.0 | 239.0 | 57.0 |
| 02 | 64.0 | 80.0 | 115.0 | 241.0 |
| 03 | 66.0 | 267.0 | 92.0 | 75.0 |
| 04 | 245.0 | 105.0 | 98.0 | 52.0 |
| 05 | 45.0 | 167.0 | 175.0 | 113.0 |
| 06 | 40.0 | 287.0 | 57.0 | 116.0 |
| 07 | 128.0 | 34.0 | 105.0 | 233.0 |
| 08 | 10.0 | 6.0 | 480.0 | 4.0 |
| 09 | 5.0 | 40.0 | 27.0 | 428.0 |
| 10 | 45.0 | 67.0 | 8.0 | 380.0 |
| 11 | 75.0 | 22.0 | 347.0 | 56.0 |
| 12 | 12.0 | 453.0 | 4.0 | 31.0 |
| 13 | 8.0 | 217.0 | 10.0 | 265.0 |
| 14 | 313.0 | 8.0 | 167.0 | 12.0 |
| 15 | 64.0 | 18.0 | 323.0 | 95.0 |
| 16 | 25.0 | 28.0 | 435.0 | 12.0 |
| 17 | 71.0 | 197.0 | 157.0 | 75.0 |
| 18 | 266.0 | 78.0 | 105.0 | 51.0 |
| 19 | 154.0 | 54.0 | 260.0 | 32.0 |
| 20 | 275.0 | 74.0 | 110.0 | 41.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.271 | -0.135 | 0.642 | -0.771 |
| 02 | -0.658 | -0.439 | -0.082 | 0.651 |
| 03 | -0.628 | 0.752 | -0.302 | -0.503 |
| 04 | 0.667 | -0.172 | -0.24 | -0.86 |
| 05 | -1.0 | 0.287 | 0.333 | -0.1 |
| 06 | -1.114 | 0.824 | -0.771 | -0.074 |
| 07 | 0.023 | -1.27 | -0.172 | 0.617 |
| 08 | -2.394 | -2.819 | 1.336 | -3.126 |
| 09 | -2.961 | -1.114 | -1.489 | 1.222 |
| 10 | -1.0 | -0.613 | -2.584 | 1.104 |
| 11 | -0.503 | -1.681 | 1.013 | -0.788 |
| 12 | -2.234 | 1.279 | -3.126 | -1.358 |
| 13 | -2.584 | 0.546 | -2.394 | 0.745 |
| 14 | 0.91 | -2.584 | 0.287 | -2.234 |
| 15 | -0.658 | -1.868 | 0.942 | -0.271 |
| 16 | -1.561 | -1.454 | 1.238 | -2.234 |
| 17 | -0.556 | 0.45 | 0.225 | -0.503 |
| 18 | 0.749 | -0.464 | -0.172 | -0.879 |
| 19 | 0.206 | -0.823 | 0.726 | -1.328 |
| 20 | 0.782 | -0.516 | -0.126 | -1.09 |