We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRFX5
(GeneCards)
ModelRFX5_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusYWGTTdCYRKG
Best auROC (human)0.926
Best auROC (mouse)
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)
Aligned words167
TF familyRFX-related factors {3.3.3}
TF subfamilyRFX5 {3.3.3.0.5}
HGNCHGNC:9986
EntrezGeneGeneID:5993
(SSTAR profile)
UniProt IDRFX5_HUMAN
UniProt ACP48382
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.629754999999999
0.0005 5.523125
0.0001 7.400885
GTEx tissue expression atlas RFX5 expression
ReMap ChIP-seq dataset list RFX5 datasets
Motifs in JASPAR
MA0510.1 (RFX5; Homo sapiens)
MA0510.2 (RFX5; Homo sapiens)
PCM
ACGT
0110.0107.016.034.0
0248.04.025.090.0
033.00.0162.02.0
040.02.00.0165.0
0513.021.02.0131.0
0627.06.0107.027.0
071.0159.02.05.0
083.054.04.0106.0
09110.04.047.06.0
1026.05.0102.034.0
115.016.0145.01.0
PWM
ACGT
01-1.3390.923-0.912-0.199
020.136-2.098-0.4930.752
03-2.308-3.5151.334-2.574
04-3.515-2.574-3.5151.352
05-1.103-0.658-2.5741.123
06-0.42-1.7770.923-0.42
07-2.9381.315-2.574-1.925
08-2.3080.251-2.0980.914
090.95-2.0980.115-1.777
10-0.456-1.9250.876-0.199
11-1.925-0.9121.224-2.938