Model info
| Transcription factor | RFX5 (GeneCards) | ||||||||
| Model | RFX5_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | YWGTTdCYRKG | ||||||||
| Best auROC (human) | 0.926 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 14 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 167 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX5 {3.3.3.0.5} | ||||||||
| HGNC | HGNC:9986 | ||||||||
| EntrezGene | GeneID:5993 (SSTAR profile) | ||||||||
| UniProt ID | RFX5_HUMAN | ||||||||
| UniProt AC | P48382 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RFX5 expression | ||||||||
| ReMap ChIP-seq dataset list | RFX5 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 10.0 | 107.0 | 16.0 | 34.0 |
| 02 | 48.0 | 4.0 | 25.0 | 90.0 |
| 03 | 3.0 | 0.0 | 162.0 | 2.0 |
| 04 | 0.0 | 2.0 | 0.0 | 165.0 |
| 05 | 13.0 | 21.0 | 2.0 | 131.0 |
| 06 | 27.0 | 6.0 | 107.0 | 27.0 |
| 07 | 1.0 | 159.0 | 2.0 | 5.0 |
| 08 | 3.0 | 54.0 | 4.0 | 106.0 |
| 09 | 110.0 | 4.0 | 47.0 | 6.0 |
| 10 | 26.0 | 5.0 | 102.0 | 34.0 |
| 11 | 5.0 | 16.0 | 145.0 | 1.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.339 | 0.923 | -0.912 | -0.199 |
| 02 | 0.136 | -2.098 | -0.493 | 0.752 |
| 03 | -2.308 | -3.515 | 1.334 | -2.574 |
| 04 | -3.515 | -2.574 | -3.515 | 1.352 |
| 05 | -1.103 | -0.658 | -2.574 | 1.123 |
| 06 | -0.42 | -1.777 | 0.923 | -0.42 |
| 07 | -2.938 | 1.315 | -2.574 | -1.925 |
| 08 | -2.308 | 0.251 | -2.098 | 0.914 |
| 09 | 0.95 | -2.098 | 0.115 | -1.777 |
| 10 | -0.456 | -1.925 | 0.876 | -0.199 |
| 11 | -1.925 | -0.912 | 1.224 | -2.938 |