Transcription factor | Rfx6 | ||||||||
Model | RFX6_MOUSE.H11MO.0.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | bdGYWKCYnKG | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.998 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 501 | ||||||||
TF family | RFX-related factors {3.3.3} | ||||||||
TF subfamily | RFX6 (RFXDC-1) {3.3.3.0.6} | ||||||||
MGI | MGI:2445208 | ||||||||
EntrezGene | GeneID:320995 (SSTAR profile) | ||||||||
UniProt ID | RFX6_MOUSE | ||||||||
UniProt AC | Q8C7R7 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Rfx6 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 54.0 | 229.0 | 120.0 | 97.0 |
02 | 66.0 | 59.0 | 170.0 | 205.0 |
03 | 20.0 | 16.0 | 454.0 | 10.0 |
04 | 17.0 | 86.0 | 61.0 | 336.0 |
05 | 74.0 | 73.0 | 29.0 | 324.0 |
06 | 37.0 | 13.0 | 315.0 | 135.0 |
07 | 6.0 | 467.0 | 9.0 | 18.0 |
08 | 4.0 | 291.0 | 3.0 | 202.0 |
09 | 187.0 | 105.0 | 109.0 | 99.0 |
10 | 119.0 | 5.0 | 236.0 | 140.0 |
11 | 28.0 | 4.0 | 465.0 | 3.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.823 | 0.6 | -0.04 | -0.25 |
02 | -0.628 | -0.737 | 0.304 | 0.49 |
03 | -1.77 | -1.975 | 1.281 | -2.394 |
04 | -1.92 | -0.368 | -0.705 | 0.981 |
05 | -0.516 | -0.529 | -1.421 | 0.945 |
06 | -1.189 | -2.163 | 0.917 | 0.076 |
07 | -2.819 | 1.309 | -2.484 | -1.868 |
08 | -3.126 | 0.838 | -3.325 | 0.475 |
09 | 0.399 | -0.172 | -0.135 | -0.23 |
10 | -0.049 | -2.961 | 0.63 | 0.112 |
11 | -1.454 | -3.126 | 1.305 | -3.325 |