Model info
| Transcription factor | Rfx6 | ||||||||
| Model | RFX6_MOUSE.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dGYTGCYdKGvdvv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.979 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 502 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX6 (RFXDC-1) {3.3.3.0.6} | ||||||||
| MGI | MGI:2445208 | ||||||||
| EntrezGene | GeneID:320995 (SSTAR profile) | ||||||||
| UniProt ID | RFX6_MOUSE | ||||||||
| UniProt AC | Q8C7R7 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rfx6 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 73.0 | 45.0 | 208.0 | 174.0 |
| 02 | 13.0 | 6.0 | 478.0 | 3.0 |
| 03 | 23.0 | 103.0 | 24.0 | 350.0 |
| 04 | 30.0 | 7.0 | 12.0 | 451.0 |
| 05 | 35.0 | 17.0 | 406.0 | 42.0 |
| 06 | 2.0 | 481.0 | 8.0 | 9.0 |
| 07 | 4.0 | 238.0 | 0.0 | 258.0 |
| 08 | 263.0 | 33.0 | 140.0 | 64.0 |
| 09 | 72.0 | 0.0 | 308.0 | 120.0 |
| 10 | 5.0 | 3.0 | 491.0 | 1.0 |
| 11 | 179.0 | 82.0 | 162.0 | 77.0 |
| 12 | 171.0 | 61.0 | 141.0 | 127.0 |
| 13 | 286.0 | 58.0 | 99.0 | 57.0 |
| 14 | 111.0 | 280.0 | 61.0 | 48.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.529 | -1.0 | 0.504 | 0.327 |
| 02 | -2.163 | -2.819 | 1.332 | -3.325 |
| 03 | -1.64 | -0.191 | -1.6 | 1.022 |
| 04 | -1.389 | -2.694 | -2.234 | 1.274 |
| 05 | -1.242 | -1.92 | 1.17 | -1.067 |
| 06 | -3.573 | 1.338 | -2.584 | -2.484 |
| 07 | -3.126 | 0.638 | -4.4 | 0.718 |
| 08 | 0.737 | -1.298 | 0.112 | -0.658 |
| 09 | -0.543 | -4.4 | 0.894 | -0.04 |
| 10 | -2.961 | -3.325 | 1.359 | -3.903 |
| 11 | 0.355 | -0.415 | 0.256 | -0.477 |
| 12 | 0.31 | -0.705 | 0.119 | 0.016 |
| 13 | 0.821 | -0.754 | -0.23 | -0.771 |
| 14 | -0.117 | 0.8 | -0.705 | -0.938 |