We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRHOXF1
(GeneCards)
ModelRHXF1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusnvbGGAThWdv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words3731
TF familyPaired-related HD factors {3.1.3}
TF subfamilyRHOX {3.1.3.23}
HGNCHGNC:29993
EntrezGeneGeneID:158800
(SSTAR profile)
UniProt IDRHXF1_HUMAN
UniProt ACQ8NHV9
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.424849999999999
0.0005 6.144875000000001
0.0001 7.398009999999999
GTEx tissue expression atlas RHOXF1 expression
ReMap ChIP-seq dataset list RHOXF1 datasets
Motifs in JASPAR
MA0719.1 (RHOXF1; Homo sapiens)
PCM
ACGT
011013.1661111.182871.501571.884
021153.47526.9061449.459437.898
03389.216405.2492002.654770.615
0496.92238.6133396.23635.962
056.0084.5953539.63917.492
062784.027656.856111.65215.198
0726.68216.07923.3183501.654
08535.841311.678194.8551525.36
092663.606142.475223.033538.619
101277.343397.0850.5191042.871
11576.8551540.0931013.516437.27
PWM
ACGT
010.1270.219-0.023-0.443
020.257-0.5250.485-0.709
03-0.826-0.7860.808-0.146
04-2.201-3.091.335-3.158
05-4.71-4.9031.377-3.823
061.137-0.305-2.062-3.948
07-3.438-3.898-3.5621.366
08-0.5080.385-1.5130.536
091.093-1.822-1.379-0.503
100.358-0.807-0.0470.156
11-0.4350.5450.128-0.71