We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRORA
(GeneCards)
ModelRORA_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
C
Motif rank
0
ConsensusndvhndRGGYCAvnvn
Best auROC (human)0.58
Best auROC (mouse)0.809
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words501
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyROR (NR1F) {2.1.2.6}
HGNCHGNC:10258
EntrezGeneGeneID:6095
(SSTAR profile)
UniProt IDRORA_HUMAN
UniProt ACP35398
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.179960000000001
0.0005 12.158460000000002
0.0001 15.368760000000002
GTEx tissue expression atlas RORA expression
ReMap ChIP-seq dataset list RORA datasets
Motifs in JASPAR
MA0071.1 (RORA; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0163.017.057.022.048.018.02.032.049.02.067.010.029.011.041.032.0
02106.033.030.020.026.010.05.07.068.036.036.027.048.017.024.07.0
03130.025.019.074.016.023.08.049.028.032.025.010.05.018.06.032.0
0430.058.054.037.037.023.06.032.023.06.016.013.017.068.059.021.0
0533.014.033.027.035.027.04.089.015.015.027.078.05.015.054.029.0
0671.01.016.00.060.01.09.01.093.02.022.01.0119.07.094.03.0
072.01.0334.06.00.00.011.00.00.01.0136.04.00.01.03.01.0
080.00.02.00.00.00.03.00.04.01.0477.02.00.00.011.00.0
093.01.00.00.01.00.00.00.068.087.027.0311.00.00.00.02.0
100.071.01.00.00.087.01.00.00.025.01.01.00.0307.00.06.0
110.00.00.00.0467.03.013.07.03.00.00.00.06.01.00.00.0
1286.0121.0208.061.00.02.02.00.02.06.02.03.02.02.02.01.0
1324.09.036.021.032.025.026.048.051.046.071.046.09.04.036.016.0
1418.04.082.012.031.017.017.019.034.023.094.018.011.030.078.012.0
1527.022.038.07.029.08.06.031.068.059.078.066.06.011.023.021.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.695-0.5990.595-0.3460.425-0.543-2.5840.0230.445-2.5840.756-1.114-0.074-1.0220.2690.023
021.2130.054-0.04-0.439-0.181-1.114-1.77-1.4540.7710.140.14-0.1440.425-0.599-0.26-1.454
031.416-0.22-0.490.855-0.658-0.302-1.3280.445-0.1080.023-0.22-1.114-1.77-0.543-1.60.023
04-0.040.6130.5420.1670.167-0.302-1.60.023-0.302-1.6-0.658-0.86-0.5990.7710.63-0.392
050.054-0.7880.054-0.1440.112-0.144-1.9751.039-0.721-0.721-0.1440.907-1.77-0.7210.542-0.074
060.814-3.126-0.658-4.40.646-3.126-1.215-3.1261.082-2.584-0.346-3.1261.328-1.4541.093-2.234
07-2.584-3.1262.358-1.6-4.4-4.4-1.022-4.4-4.4-3.1261.461-1.975-4.4-3.126-2.234-3.126
08-4.4-4.4-2.584-4.4-4.4-4.4-2.234-4.4-1.975-3.1262.714-2.584-4.4-4.4-1.022-4.4
09-2.234-3.126-4.4-4.4-3.126-4.4-4.4-4.40.7711.016-0.1442.287-4.4-4.4-4.4-2.584
10-4.40.814-3.126-4.4-4.41.016-3.126-4.4-4.4-0.22-3.126-3.126-4.42.274-4.4-1.6
11-4.4-4.4-4.4-4.42.693-2.234-0.86-1.454-2.234-4.4-4.4-4.4-1.6-3.126-4.4-4.4
121.0041.3451.8850.663-4.4-2.584-2.584-4.4-2.584-1.6-2.584-2.234-2.584-2.584-2.584-3.126
13-0.26-1.2150.14-0.3920.023-0.22-0.1810.4250.4850.3830.8140.383-1.215-1.9750.14-0.658
14-0.543-1.9750.957-0.938-0.008-0.599-0.599-0.490.083-0.3021.093-0.543-1.022-0.040.907-0.938
15-0.144-0.3460.193-1.454-0.074-1.328-1.6-0.0080.7710.630.9070.741-1.6-1.022-0.302-0.392