We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRORA
(GeneCards)
ModelRORA_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusvhbdRGGbCAvdR
Best auROC (human)0.682
Best auROC (mouse)0.788
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyROR (NR1F) {2.1.2.6}
HGNCHGNC:10258
EntrezGeneGeneID:6095
(SSTAR profile)
UniProt IDRORA_HUMAN
UniProt ACP35398
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.358560000000001
0.0005 6.17151
0.0001 7.703965
GTEx tissue expression atlas RORA expression
ReMap ChIP-seq dataset list RORA datasets
Motifs in JASPAR
MA0071.1 (RORA; Homo sapiens)
PCM
ACGT
01267.0114.073.046.0
02224.065.049.0162.0
0380.0197.0137.086.0
04126.035.082.0257.0
05275.08.0212.05.0
0636.02.0441.021.0
0710.03.0474.013.0
0837.086.0121.0256.0
091.0475.022.02.0
10481.04.05.010.0
11172.061.0228.039.0
12149.039.0213.099.0
13102.050.0305.043.0
PWM
ACGT
010.752-0.091-0.529-0.979
020.578-0.643-0.9180.256
03-0.4390.450.091-0.368
040.008-1.242-0.4150.714
050.782-2.5840.523-2.961
06-1.215-3.5731.252-1.725
07-2.394-3.3251.324-2.163
08-1.189-0.368-0.0320.711
09-3.9031.326-1.681-3.573
101.338-3.126-2.961-2.394
110.316-0.7050.595-1.138
120.174-1.1380.528-0.23
13-0.201-0.8980.885-1.044