We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRORC
(GeneCards)
ModelRORG_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusvdRWSTRRGKCA
Best auROC (human)
Best auROC (mouse)0.91
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)19
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyROR (NR1F) {2.1.2.6}
HGNCHGNC:10260
EntrezGeneGeneID:6097
(SSTAR profile)
UniProt IDRORG_HUMAN
UniProt ACP51449
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.031495
0.0005 5.936115
0.0001 7.754525
GTEx tissue expression atlas RORC expression
ReMap ChIP-seq dataset list RORC datasets
Motifs in JASPAR
PCM
ACGT
01121.094.0215.070.0
02238.051.0123.088.0
03352.048.054.046.0
04325.09.025.0141.0
0542.0200.0228.030.0
0622.019.029.0430.0
07244.04.0250.02.0
08157.05.0318.020.0
0912.011.0468.09.0
1010.045.061.0384.0
115.0475.09.011.0
12489.01.07.03.0
PWM
ACGT
01-0.032-0.2810.537-0.57
020.638-0.879-0.016-0.346
031.027-0.938-0.823-0.979
040.948-2.484-1.5610.119
05-1.0670.4650.595-1.389
06-1.681-1.818-1.4211.227
070.663-3.1260.687-3.573
080.225-2.9610.926-1.77
09-2.234-2.3111.311-2.484
10-2.394-1.0-0.7051.114
11-2.9611.326-2.484-2.311
121.355-3.903-2.694-3.325