We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRorc
ModelRORG_MOUSE.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
B
Motif rank
0
ConsensusndWWvTRRGTCAn
Best auROC (human)
Best auROC (mouse)0.928
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)19
Aligned words504
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyROR (NR1F) {2.1.2.6}
MGIMGI:104856
EntrezGeneGeneID:19885
(SSTAR profile)
UniProt IDRORG_MOUSE
UniProt ACP51450
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.71507
0.0005 11.639765
0.0001 15.505025
GTEx tissue expression atlas Rorc expression
Motifs in JASPAR
MA1151.1 (RORC; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0161.011.039.014.053.014.06.029.094.013.050.028.021.018.032.017.0
02180.08.027.014.034.010.01.011.086.04.019.018.060.05.07.016.0
03244.04.012.0100.011.03.00.013.027.05.012.010.022.01.011.025.0
0437.0117.0131.019.02.07.02.02.08.018.08.01.013.056.060.019.0
050.02.05.053.07.05.03.0183.03.09.05.0184.01.02.08.030.0
064.01.06.00.013.01.04.00.016.00.05.00.0201.03.0240.06.0
074.02.0223.05.03.00.00.02.0127.01.0108.019.06.00.00.00.0
081.00.0136.03.01.00.02.00.03.01.0322.05.00.00.026.00.0
090.00.03.02.00.00.00.01.015.042.036.0393.00.00.00.08.0
100.015.00.00.00.041.00.01.00.038.01.00.02.0380.04.018.0
112.00.00.00.0458.01.012.03.05.00.00.00.015.00.00.04.0
1272.0141.0152.0115.00.00.01.00.01.01.03.07.01.04.02.00.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.663-1.0220.219-0.7880.523-0.788-1.6-0.0741.093-0.860.465-0.108-0.392-0.5430.023-0.599
021.741-1.328-0.144-0.7880.083-1.114-3.126-1.0221.004-1.975-0.49-0.5430.646-1.77-1.454-0.658
032.044-1.975-0.9381.155-1.022-2.234-4.4-0.86-0.144-1.77-0.938-1.114-0.346-3.126-1.022-0.22
040.1671.3111.424-0.49-2.584-1.454-2.584-2.584-1.328-0.543-1.328-3.126-0.860.5780.646-0.49
05-4.4-2.584-1.770.523-1.454-1.77-2.2341.757-2.234-1.215-1.771.763-3.126-2.584-1.328-0.04
06-1.975-3.126-1.6-4.4-0.86-3.126-1.975-4.4-0.658-4.4-1.77-4.41.851-2.2342.028-1.6
07-1.975-2.5841.955-1.77-2.234-4.4-4.4-2.5841.393-3.1261.231-0.49-1.6-4.4-4.4-4.4
08-3.126-4.41.461-2.234-3.126-4.4-2.584-4.4-2.234-3.1262.321-1.77-4.4-4.4-0.181-4.4
09-4.4-4.4-2.234-2.584-4.4-4.4-4.4-3.126-0.7210.2930.142.52-4.4-4.4-4.4-1.328
10-4.4-0.721-4.4-4.4-4.40.269-4.4-3.126-4.40.193-3.126-4.4-2.5842.487-1.975-0.543
11-2.584-4.4-4.4-4.42.673-3.126-0.938-2.234-1.77-4.4-4.4-4.4-0.721-4.4-4.4-1.975
120.8281.4971.5721.294-4.4-4.4-3.126-4.4-3.126-3.126-2.234-1.454-3.126-1.975-2.584-4.4