Model info
| Transcription factor | Rorc | ||||||||
| Model | RORG_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdRWSTRRGKCA | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.91 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 19 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | ROR (NR1F) {2.1.2.6} | ||||||||
| MGI | MGI:104856 | ||||||||
| EntrezGene | GeneID:19885 (SSTAR profile) | ||||||||
| UniProt ID | RORG_MOUSE | ||||||||
| UniProt AC | P51450 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rorc expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 121.0 | 94.0 | 215.0 | 70.0 |
| 02 | 238.0 | 51.0 | 123.0 | 88.0 |
| 03 | 352.0 | 48.0 | 54.0 | 46.0 |
| 04 | 325.0 | 9.0 | 25.0 | 141.0 |
| 05 | 42.0 | 200.0 | 228.0 | 30.0 |
| 06 | 22.0 | 19.0 | 29.0 | 430.0 |
| 07 | 244.0 | 4.0 | 250.0 | 2.0 |
| 08 | 157.0 | 5.0 | 318.0 | 20.0 |
| 09 | 12.0 | 11.0 | 468.0 | 9.0 |
| 10 | 10.0 | 45.0 | 61.0 | 384.0 |
| 11 | 5.0 | 475.0 | 9.0 | 11.0 |
| 12 | 489.0 | 1.0 | 7.0 | 3.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.032 | -0.281 | 0.537 | -0.57 |
| 02 | 0.638 | -0.879 | -0.016 | -0.346 |
| 03 | 1.027 | -0.938 | -0.823 | -0.979 |
| 04 | 0.948 | -2.484 | -1.561 | 0.119 |
| 05 | -1.067 | 0.465 | 0.595 | -1.389 |
| 06 | -1.681 | -1.818 | -1.421 | 1.227 |
| 07 | 0.663 | -3.126 | 0.687 | -3.573 |
| 08 | 0.225 | -2.961 | 0.926 | -1.77 |
| 09 | -2.234 | -2.311 | 1.311 | -2.484 |
| 10 | -2.394 | -1.0 | -0.705 | 1.114 |
| 11 | -2.961 | 1.326 | -2.484 | -2.311 |
| 12 | 1.355 | -3.903 | -2.694 | -3.325 |