We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRUNX1
(GeneCards)
ModelRUNX1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusnbTGTGGTYWbnbbnbn
Best auROC (human)0.966
Best auROC (mouse)0.985
Peak sets in benchmark (human)115
Peak sets in benchmark (mouse)63
Aligned words514
TF familyRunt-related factors {6.4.1}
TF subfamilyRunx1 (PEBP2alphaB, CBF-alpha2, AML-1) {6.4.1.0.2}
HGNCHGNC:10471
EntrezGeneGeneID:861
(SSTAR profile)
UniProt IDRUNX1_HUMAN
UniProt ACQ01196
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.969860000000001
0.0005 10.44846
0.0001 15.17656
GTEx tissue expression atlas RUNX1 expression
ReMap ChIP-seq dataset list RUNX1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
017.034.021.017.014.059.08.042.027.084.018.022.02.070.016.057.0
027.03.01.039.013.020.02.0212.03.04.00.056.07.04.03.0124.0
031.00.027.02.00.00.031.00.00.00.06.00.00.02.0428.01.0
040.00.00.01.00.00.00.02.010.087.00.0395.00.00.00.03.0
050.00.010.00.00.00.087.00.00.00.00.00.00.00.0401.00.0
060.00.00.00.00.00.00.00.00.04.0494.00.00.00.00.00.0
070.00.00.00.00.00.00.04.01.068.025.0400.00.00.00.00.0
080.00.00.01.00.033.03.032.02.011.00.012.021.0111.032.0240.0
099.00.01.013.080.04.019.052.011.04.012.08.063.06.036.0180.0
1032.030.070.031.01.04.03.06.013.015.030.010.018.080.079.076.0
1113.016.025.010.014.053.08.054.032.043.043.064.010.041.044.028.0
1211.015.028.015.010.051.030.062.013.027.048.032.014.024.078.040.0
1311.08.012.017.021.024.016.056.027.024.064.069.014.019.061.055.0
1411.016.030.016.020.020.07.028.031.027.045.050.028.022.097.050.0
1520.014.034.022.024.017.012.032.017.023.095.044.017.028.052.047.0
1621.07.028.022.012.028.016.026.034.041.045.073.014.026.068.037.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.4510.087-0.388-0.595-0.7840.634-1.3240.296-0.140.985-0.539-0.342-2.580.804-0.6540.599
02-1.451-2.23-3.1220.223-0.856-0.435-2.581.908-2.23-1.971-4.3970.582-1.451-1.971-2.231.373
03-3.122-4.397-0.14-2.58-4.397-4.397-0.004-4.397-4.397-4.397-1.596-4.397-4.397-2.582.61-3.122
04-4.397-4.397-4.397-3.122-4.397-4.397-4.397-2.58-1.111.02-4.3972.529-4.397-4.397-4.397-2.23
05-4.397-4.397-1.11-4.397-4.397-4.3971.02-4.397-4.397-4.397-4.397-4.397-4.397-4.3972.545-4.397
06-4.397-4.397-4.397-4.397-4.397-4.397-4.397-4.397-4.397-1.9712.753-4.397-4.397-4.397-4.397-4.397
07-4.397-4.397-4.397-4.397-4.397-4.397-4.397-1.971-3.1220.775-0.2162.542-4.397-4.397-4.397-4.397
08-4.397-4.397-4.397-3.122-4.3970.058-2.230.027-2.58-1.018-4.397-0.934-0.3881.2630.0272.032
09-1.211-4.397-3.122-0.8560.936-1.971-0.4860.508-1.018-1.971-0.934-1.3240.699-1.5960.1441.745
100.027-0.0360.804-0.004-3.122-1.971-2.23-1.596-0.856-0.717-0.036-1.11-0.5390.9360.9240.885
11-0.856-0.654-0.216-1.11-0.7840.527-1.3240.5460.0270.320.320.715-1.110.2730.343-0.104
12-1.018-0.717-0.104-0.717-1.110.489-0.0360.683-0.856-0.140.4290.027-0.784-0.2560.9110.248
13-1.018-1.324-0.934-0.595-0.388-0.256-0.6540.582-0.14-0.2560.7150.789-0.784-0.4860.6670.564
14-1.018-0.654-0.036-0.654-0.435-0.435-1.451-0.104-0.004-0.140.3650.469-0.104-0.3421.1280.469
15-0.435-0.7840.087-0.342-0.256-0.595-0.9340.027-0.595-0.2981.1080.343-0.595-0.1040.5080.408
16-0.388-1.451-0.104-0.342-0.934-0.104-0.654-0.1770.0870.2730.3650.845-0.784-0.1770.7750.171