Model info
| Transcription factor | RUNX1 (GeneCards) | ||||||||
| Model | RUNX1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bhTGTGGTYWn | ||||||||
| Best auROC (human) | 0.964 | ||||||||
| Best auROC (mouse) | 0.983 | ||||||||
| Peak sets in benchmark (human) | 115 | ||||||||
| Peak sets in benchmark (mouse) | 63 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Runt-related factors {6.4.1} | ||||||||
| TF subfamily | Runx1 (PEBP2alphaB, CBF-alpha2, AML-1) {6.4.1.0.2} | ||||||||
| HGNC | HGNC:10471 | ||||||||
| EntrezGene | GeneID:861 (SSTAR profile) | ||||||||
| UniProt ID | RUNX1_HUMAN | ||||||||
| UniProt AC | Q01196 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RUNX1 expression | ||||||||
| ReMap ChIP-seq dataset list | RUNX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 57.0 | 106.0 | 151.0 | 186.0 |
| 02 | 75.0 | 235.0 | 19.0 | 171.0 |
| 03 | 35.0 | 4.0 | 13.0 | 448.0 |
| 04 | 1.0 | 3.0 | 488.0 | 8.0 |
| 05 | 16.0 | 43.0 | 5.0 | 436.0 |
| 06 | 0.0 | 0.0 | 497.0 | 3.0 |
| 07 | 2.0 | 1.0 | 495.0 | 2.0 |
| 08 | 2.0 | 43.0 | 17.0 | 438.0 |
| 09 | 14.0 | 78.0 | 20.0 | 388.0 |
| 10 | 142.0 | 20.0 | 56.0 | 282.0 |
| 11 | 69.0 | 176.0 | 123.0 | 132.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.771 | -0.163 | 0.187 | 0.393 |
| 02 | -0.503 | 0.626 | -1.818 | 0.31 |
| 03 | -1.242 | -3.126 | -2.163 | 1.268 |
| 04 | -3.903 | -3.325 | 1.353 | -2.584 |
| 05 | -1.975 | -1.044 | -2.961 | 1.241 |
| 06 | -4.4 | -4.4 | 1.371 | -3.325 |
| 07 | -3.573 | -3.903 | 1.367 | -3.573 |
| 08 | -3.573 | -1.044 | -1.92 | 1.245 |
| 09 | -2.096 | -0.464 | -1.77 | 1.124 |
| 10 | 0.126 | -1.77 | -0.788 | 0.807 |
| 11 | -0.584 | 0.339 | -0.016 | 0.054 |