We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRUNX1
(GeneCards)
ModelRUNX1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusbhTGTGGTYWn
Best auROC (human)0.964
Best auROC (mouse)0.983
Peak sets in benchmark (human)115
Peak sets in benchmark (mouse)63
Aligned words500
TF familyRunt-related factors {6.4.1}
TF subfamilyRunx1 (PEBP2alphaB, CBF-alpha2, AML-1) {6.4.1.0.2}
HGNCHGNC:10471
EntrezGeneGeneID:861
(SSTAR profile)
UniProt IDRUNX1_HUMAN
UniProt ACQ01196
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.65005
0.0005 5.667455
0.0001 7.74155
GTEx tissue expression atlas RUNX1 expression
ReMap ChIP-seq dataset list RUNX1 datasets
Motifs in JASPAR
PCM
ACGT
0157.0106.0151.0186.0
0275.0235.019.0171.0
0335.04.013.0448.0
041.03.0488.08.0
0516.043.05.0436.0
060.00.0497.03.0
072.01.0495.02.0
082.043.017.0438.0
0914.078.020.0388.0
10142.020.056.0282.0
1169.0176.0123.0132.0
PWM
ACGT
01-0.771-0.1630.1870.393
02-0.5030.626-1.8180.31
03-1.242-3.126-2.1631.268
04-3.903-3.3251.353-2.584
05-1.975-1.044-2.9611.241
06-4.4-4.41.371-3.325
07-3.573-3.9031.367-3.573
08-3.573-1.044-1.921.245
09-2.096-0.464-1.771.124
100.126-1.77-0.7880.807
11-0.5840.339-0.0160.054