Model info
| Transcription factor | Runx1 | ||||||||
| Model | RUNX1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbYTGTGGTYWb | ||||||||
| Best auROC (human) | 0.963 | ||||||||
| Best auROC (mouse) | 0.984 | ||||||||
| Peak sets in benchmark (human) | 115 | ||||||||
| Peak sets in benchmark (mouse) | 63 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Runt-related factors {6.4.1} | ||||||||
| TF subfamily | Runx1 (PEBP2alphaB, CBF-alpha2, AML-1) {6.4.1.0.2} | ||||||||
| MGI | MGI:99852 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | RUNX1_MOUSE | ||||||||
| UniProt AC | Q03347 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Runx1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 57.0 | 137.0 | 178.0 | 128.0 |
| 02 | 57.0 | 141.0 | 96.0 | 206.0 |
| 03 | 36.0 | 254.0 | 22.0 | 188.0 |
| 04 | 10.0 | 2.0 | 3.0 | 485.0 |
| 05 | 3.0 | 3.0 | 493.0 | 1.0 |
| 06 | 24.0 | 48.0 | 4.0 | 424.0 |
| 07 | 1.0 | 0.0 | 499.0 | 0.0 |
| 08 | 3.0 | 2.0 | 495.0 | 0.0 |
| 09 | 3.0 | 33.0 | 36.0 | 428.0 |
| 10 | 21.0 | 117.0 | 10.0 | 352.0 |
| 11 | 167.0 | 19.0 | 53.0 | 261.0 |
| 12 | 61.0 | 152.0 | 173.0 | 114.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.771 | 0.091 | 0.35 | 0.023 |
| 02 | -0.771 | 0.119 | -0.26 | 0.495 |
| 03 | -1.215 | 0.703 | -1.681 | 0.404 |
| 04 | -2.394 | -3.573 | -3.325 | 1.347 |
| 05 | -3.325 | -3.325 | 1.363 | -3.903 |
| 06 | -1.6 | -0.938 | -3.126 | 1.213 |
| 07 | -3.903 | -4.4 | 1.375 | -4.4 |
| 08 | -3.325 | -3.573 | 1.367 | -4.4 |
| 09 | -3.325 | -1.298 | -1.215 | 1.222 |
| 10 | -1.725 | -0.065 | -2.394 | 1.027 |
| 11 | 0.287 | -1.818 | -0.841 | 0.73 |
| 12 | -0.705 | 0.193 | 0.322 | -0.091 |